Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QPK16_RS24800 Genome accession   NZ_OX638610
Coordinates   5351217..5351852 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain 3541 isolate 3541     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5346217..5356852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK16_RS24770 (JCHGIK_26000) murB 5347315..5348334 (-) 1020 WP_043096154.1 UDP-N-acetylmuramate dehydrogenase -
  QPK16_RS24775 (JCHGIK_26005) - 5348331..5348795 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  QPK16_RS24780 (JCHGIK_26010) kdsB 5348795..5349559 (-) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QPK16_RS24785 (JCHGIK_26015) - 5349559..5349744 (-) 186 WP_003091157.1 Trm112 family protein -
  QPK16_RS24790 (JCHGIK_26020) lpxK 5349782..5350780 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  QPK16_RS24795 (JCHGIK_26025) - 5350780..5351220 (-) 441 WP_003091161.1 biopolymer transporter ExbD -
  QPK16_RS24800 (JCHGIK_26030) exbB 5351217..5351852 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QPK16_RS24805 (JCHGIK_26035) comA 5351925..5354150 (-) 2226 WP_049307922.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QPK16_RS24810 (JCHGIK_26040) - 5354281..5354814 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  QPK16_RS24815 (JCHGIK_26045) - 5354902..5356146 (-) 1245 WP_043096206.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=1160177 QPK16_RS24800 WP_003091163.1 5351217..5351852(-) (exbB) [Pseudomonas aeruginosa strain 3541 isolate 3541]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1160177 QPK16_RS24800 WP_003091163.1 5351217..5351852(-) (exbB) [Pseudomonas aeruginosa strain 3541 isolate 3541]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment