Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QQG90_RS15375 Genome accession   NZ_OX637964
Coordinates   3070899..3071528 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli O25b:H4-ST131 isolate 46     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3065899..3076528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQG90_RS15360 helD 3066141..3068195 (-) 2055 WP_001295938.1 DNA helicase IV -
  QQG90_RS15365 yccF 3068318..3068764 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QQG90_RS15370 yccS 3068774..3070936 (+) 2163 WP_000875041.1 YccS family putative transporter -
  QQG90_RS15375 sxy/tfoX 3070899..3071528 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QQG90_RS15380 sulA 3071747..3072256 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  QQG90_RS15385 ompA 3072612..3073664 (+) 1053 WP_001346420.1 porin OmpA -
  QQG90_RS15390 matP 3073740..3074192 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  QQG90_RS15395 ycbZ 3074378..3076138 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1160082 QQG90_RS15375 WP_000839151.1 3070899..3071528(-) (sxy/tfoX) [Escherichia coli O25b:H4-ST131 isolate 46]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1160082 QQG90_RS15375 WP_000839151.1 3070899..3071528(-) (sxy/tfoX) [Escherichia coli O25b:H4-ST131 isolate 46]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment