Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QQG88_RS14810 Genome accession   NZ_OX637959
Coordinates   3007104..3007733 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli O25b:H4-ST131 isolate 32     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3002104..3012733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQG88_RS14795 helD 3002346..3004400 (-) 2055 WP_001295938.1 DNA helicase IV -
  QQG88_RS14800 yccF 3004523..3004969 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QQG88_RS14805 yccS 3004979..3007141 (+) 2163 WP_000875041.1 YccS family putative transporter -
  QQG88_RS14810 sxy/tfoX 3007104..3007733 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QQG88_RS14815 sulA 3007952..3008461 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  QQG88_RS14820 ompA 3008817..3009869 (+) 1053 WP_001346420.1 porin OmpA -
  QQG88_RS14825 matP 3009945..3010397 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  QQG88_RS14830 ycbZ 3010583..3012343 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1160036 QQG88_RS14810 WP_000839151.1 3007104..3007733(-) (sxy/tfoX) [Escherichia coli O25b:H4-ST131 isolate 32]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1160036 QQG88_RS14810 WP_000839151.1 3007104..3007733(-) (sxy/tfoX) [Escherichia coli O25b:H4-ST131 isolate 32]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment