Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QQM09_RS12020 Genome accession   NZ_OX596083
Coordinates   2605856..2607202 (-) Length   448 a.a.
NCBI ID   WP_260142913.1    Uniprot ID   -
Organism   Elizabethkingia anophelis strain EAV_VTKC53 isolate EAV_VTKC53     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2600856..2612202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQM09_RS11995 (EAVVTKC53_02404) - 2601156..2602130 (-) 975 WP_260142907.1 NAD-dependent epimerase/dehydratase family protein -
  QQM09_RS12000 (EAVVTKC53_02405) - 2602127..2602960 (-) 834 WP_260142909.1 SDR family NAD(P)-dependent oxidoreductase -
  QQM09_RS12005 (EAVVTKC53_02406) - 2603287..2603991 (-) 705 WP_260142910.1 VanW family protein -
  QQM09_RS12010 (EAVVTKC53_02407) - 2603998..2604678 (-) 681 WP_260142911.1 class I SAM-dependent methyltransferase -
  QQM09_RS12015 (EAVVTKC53_02408) - 2604681..2605835 (-) 1155 WP_024568383.1 helix-turn-helix domain-containing protein -
  QQM09_RS12020 (EAVVTKC53_02409) radA 2605856..2607202 (-) 1347 WP_260142913.1 DNA repair protein RadA Machinery gene
  QQM09_RS12025 (EAVVTKC53_02410) - 2607419..2609038 (+) 1620 WP_009084926.1 CTP synthase -
  QQM09_RS12030 (EAVVTKC53_02411) yidC 2609047..2610828 (+) 1782 WP_260142914.1 membrane protein insertase YidC -
  QQM09_RS12035 (EAVVTKC53_02412) - 2611098..2611676 (-) 579 WP_078412352.1 ribonuclease HII -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49815.31 Da        Isoelectric Point: 6.7597

>NTDB_id=1159984 QQM09_RS12020 WP_260142913.1 2605856..2607202(-) (radA) [Elizabethkingia anophelis strain EAV_VTKC53 isolate EAV_VTKC53]
MAKVKTAYYCQNCGSQYPQWHGQCKNCGEWNTLVEEIIEKSTSKNYSGEKKQHIINIIEVNAQEEPRIATPSDELNRVLG
GGIVLGSVTLIGGEPGIGKSTLLLQLALKMRKRVLYVSGEESASQIKMRADRLTDLQNPECFLFTETSVDKILHEAKKLQ
PQFMILDSIQTLHSSLIESSPGTVSQIRECSSEIIKFAKETNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHL
FRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRSC
TGFDAKRLNMLLAVLEKRAGFQLGSKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEKYCFAGEIGLSGEIRPVP
QIEHRITEAEKLGYDKIYVSNLNKIPKRKFAIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=1159984 QQM09_RS12020 WP_260142913.1 2605856..2607202(-) (radA) [Elizabethkingia anophelis strain EAV_VTKC53 isolate EAV_VTKC53]
GTGGCAAAGGTCAAAACGGCATATTACTGTCAAAATTGCGGATCTCAGTATCCGCAGTGGCACGGACAGTGCAAAAATTG
TGGAGAATGGAATACTTTGGTTGAAGAAATTATTGAAAAATCGACTTCAAAAAATTATTCCGGAGAAAAGAAACAACATA
TCATTAACATTATTGAGGTCAACGCTCAGGAAGAACCAAGAATTGCAACCCCGAGCGACGAACTGAATCGTGTATTGGGA
GGTGGAATTGTACTGGGTTCTGTTACCTTAATTGGTGGTGAACCGGGCATCGGGAAATCTACCCTTTTGCTTCAGCTGGC
ACTAAAAATGCGCAAGCGTGTTTTGTATGTCTCCGGAGAAGAAAGCGCTTCACAAATTAAAATGCGTGCAGACCGTCTTA
CTGACCTCCAAAATCCGGAGTGCTTCCTTTTTACAGAAACTTCTGTGGATAAAATTCTGCATGAAGCGAAAAAGCTGCAG
CCACAGTTTATGATTCTGGACTCTATACAGACATTACATTCCAGTCTTATAGAAAGTTCACCGGGAACAGTTTCTCAGAT
TCGGGAATGTTCCTCAGAAATTATAAAGTTTGCCAAAGAAACCAATACCCCGGTATTTCTGGTGGGTCATATCACCAAAG
ACGGACAAATTGCCGGTCCGAAAGTACTGGAACATATGGTGGATGTGGTTCTAAATTTCGATGGCGACAGAAATCACCTT
TTCAGGTTACTAAGAGCTAATAAAAACCGTTTTGGCTCTACTTCCGAAATCGGTATTTATGAAATGATATCTCAGGGGCT
GAAAGAAATTAAAAATCCTTCTGAAATTCTGATTACCAAAAAATTTGAAGAGCTATCCGGTAACTCGGTAGCCGTAACCC
TGGAAGGAAACCGCCCAATGCTACTGGAAATTCAGGCTTTGGTAAGTACCGCTGTTTATGGTACTCCACAGAGAAGTTGC
ACTGGTTTTGATGCAAAAAGACTGAATATGCTTCTGGCAGTATTGGAGAAACGCGCAGGCTTCCAACTTGGGTCTAAAGA
CGTGTTCCTGAATATAACCGGTGGTATTAAAACAGATGATCCGGCACTGGATTTAGCCGTTGTAGCCTCTATCCTGTCTT
CCAATGAAGATATTGCTATTTCCGAGAAGTATTGCTTTGCTGGAGAAATAGGTCTTAGTGGAGAAATACGACCTGTTCCT
CAGATTGAGCACCGTATCACAGAGGCCGAAAAACTGGGATATGATAAAATCTACGTTTCCAATCTGAATAAAATACCTAA
ACGGAAATTTGCGATAAAGATTGAAGAAGTCAGCAAAATCGAAGATTTCCACGAAAGACTATTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-216)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(337-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.359

100

0.493
  radA Streptococcus pneumoniae Rx1

48.359

100

0.493
  radA Streptococcus pneumoniae R6

48.359

100

0.493
  radA Streptococcus pneumoniae TIGR4

48.359

100

0.493
  radA Streptococcus mitis NCTC 12261

48.352

100

0.491
  radA Streptococcus mitis SK321

48.132

100

0.489
  radA Bacillus subtilis subsp. subtilis str. 168

49.188

96.205

0.473

Multiple sequence alignment