Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QOS94_RS10010 Genome accession   NZ_OX460976
Coordinates   2131763..2132716 (-) Length   317 a.a.
NCBI ID   WP_015076057.1    Uniprot ID   K8E3C5
Organism   Carnobacterium maltaromaticum strain SF2022 isolate SF2022     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2126763..2137716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS94_RS09985 - 2127558..2128088 (-) 531 WP_056998641.1 DUF308 domain-containing protein -
  QOS94_RS09990 - 2128281..2128919 (-) 639 WP_229251799.1 DUF1054 domain-containing protein -
  QOS94_RS09995 - 2129045..2130007 (-) 963 WP_056998639.1 siderophore ABC transporter substrate-binding protein -
  QOS94_RS10000 - 2130039..2130797 (-) 759 WP_010050406.1 ATP-binding cassette domain-containing protein -
  QOS94_RS10005 - 2130801..2131766 (-) 966 WP_229251798.1 iron chelate uptake ABC transporter family permease subunit -
  QOS94_RS10010 ceuB 2131763..2132716 (-) 954 WP_015076057.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  QOS94_RS10015 - 2133180..2133635 (+) 456 WP_015076056.1 YueI family protein -
  QOS94_RS10020 - 2134088..2134501 (+) 414 WP_229251797.1 hypothetical protein -
  QOS94_RS10025 - 2134547..2136208 (-) 1662 WP_229251796.1 peptide ABC transporter substrate-binding protein -
  QOS94_RS10030 - 2136227..2136940 (-) 714 WP_283644763.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34615.39 Da        Isoelectric Point: 9.2545

>NTDB_id=1159516 QOS94_RS10010 WP_015076057.1 2131763..2132716(-) (ceuB) [Carnobacterium maltaromaticum strain SF2022 isolate SF2022]
MRKGIWIVLLSVIAFVSLFIGVQDIELSHVLQFNFTKNEQLILQSTRIPRTVSLIIAGATLSICGLIMQHLTQNKFVSPT
TAGTMDSARIGILVAMLFFTDASIFQRTVIAFLFAFAGTVAFIFMVNHLQIKNAVMVPLIGLMFGSILGSIATFLAYQNN
LVQNMASWLQGNFSLVSRGNYELMYLAIPLMIIAYLYADYFTLAGLGKEVAINAGVSYQFVQFGGILIVALASSIVILTV
GSLPFLGVVVPNLIAIARGDHLRKTLFETAVFGSIFLLICDIISRIVIAPYEVSVSLVVGIIGSVLFIYLLLRGEKQ

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1159516 QOS94_RS10010 WP_015076057.1 2131763..2132716(-) (ceuB) [Carnobacterium maltaromaticum strain SF2022 isolate SF2022]
ATGAGAAAGGGGATTTGGATTGTATTACTTAGCGTTATTGCATTTGTTTCATTGTTTATTGGTGTACAAGATATTGAACT
TAGTCATGTGCTTCAGTTCAACTTCACTAAAAATGAGCAACTTATTTTGCAAAGCACAAGAATTCCGCGAACCGTTAGCT
TGATTATTGCCGGAGCTACACTGAGTATTTGTGGCTTAATCATGCAACATTTAACGCAAAATAAATTTGTTTCGCCAACA
ACAGCTGGAACAATGGATAGTGCACGAATCGGAATTTTAGTTGCGATGCTTTTTTTCACAGATGCAAGTATTTTTCAAAG
AACAGTGATTGCTTTTCTATTTGCTTTTGCTGGAACAGTCGCCTTTATTTTTATGGTCAACCACCTGCAGATTAAAAATG
CGGTGATGGTACCCCTTATTGGTTTAATGTTCGGAAGTATTTTAGGTTCGATTGCGACGTTTTTAGCGTATCAAAATAAC
TTAGTTCAAAATATGGCGTCATGGCTACAGGGGAATTTTTCATTAGTTTCTAGGGGGAATTATGAATTAATGTACTTAGC
TATACCGTTAATGATAATCGCCTATCTCTATGCAGATTATTTTACATTAGCTGGTTTAGGGAAGGAAGTTGCCATAAATG
CTGGGGTATCCTACCAATTTGTGCAATTCGGCGGAATTTTAATTGTTGCATTAGCTTCTTCCATTGTGATTTTAACCGTT
GGAAGTTTACCTTTCTTAGGTGTAGTGGTGCCTAATTTAATCGCCATTGCTCGAGGAGATCATTTGCGCAAAACACTTTT
TGAAACTGCTGTATTTGGATCGATATTTTTATTAATTTGCGATATTATCAGTCGCATTGTGATTGCACCCTATGAAGTTT
CGGTCAGTTTAGTAGTGGGCATTATTGGCAGTGTGTTGTTTATTTACCTATTATTGCGAGGTGAAAAACAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K8E3C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.196

98.107

0.483

Multiple sequence alignment