Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QOS94_RS05950 Genome accession   NZ_OX460976
Coordinates   1288339..1290054 (+) Length   571 a.a.
NCBI ID   WP_016356502.1    Uniprot ID   K8ESQ8
Organism   Carnobacterium maltaromaticum strain SF2022 isolate SF2022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1283339..1295054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS94_RS05920 - 1283480..1284322 (+) 843 WP_229251457.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  QOS94_RS05925 xseA 1284337..1285677 (+) 1341 WP_010054191.1 exodeoxyribonuclease VII large subunit -
  QOS94_RS05930 - 1285674..1285910 (+) 237 WP_015076782.1 exodeoxyribonuclease VII small subunit -
  QOS94_RS05935 - 1285926..1286807 (+) 882 WP_229251378.1 polyprenyl synthetase family protein -
  QOS94_RS05940 - 1286828..1287649 (+) 822 WP_010054194.1 TlyA family RNA methyltransferase -
  QOS94_RS05945 argR 1287849..1288298 (+) 450 WP_010054195.1 transcriptional regulator ArgR -
  QOS94_RS05950 recN 1288339..1290054 (+) 1716 WP_016356502.1 DNA repair protein RecN Machinery gene
  QOS94_RS05955 - 1290325..1291521 (+) 1197 WP_010054200.1 efflux transporter -
  QOS94_RS05960 - 1291538..1292245 (+) 708 WP_010054202.1 ABC transporter ATP-binding protein -
  QOS94_RS05965 - 1292242..1293486 (+) 1245 WP_035063735.1 FtsX-like permease family protein -
  QOS94_RS05970 - 1293532..1293678 (-) 147 WP_010054204.1 DUF4044 domain-containing protein -
  QOS94_RS05975 - 1293751..1294707 (-) 957 WP_010054205.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64912.03 Da        Isoelectric Point: 4.5743

>NTDB_id=1159502 QOS94_RS05950 WP_016356502.1 1288339..1290054(+) (recN) [Carnobacterium maltaromaticum strain SF2022 isolate SF2022]
MLQELAIKNFAIIHDLSLSFETGMTVLTGETGAGKSIIIDAVGLLAGGRASSDFIRHGENKCVLEGLFTLNKDALTFELL
KEFDIDFEDETVLIQRYIHRNGKNVCRINGRLVTIATLRLIGETMIDIHGQNEHQELMNPERHLDMLDQFGDQELVQLLT
DYDSTYVEYQKVKKAYDKWQSSEQELAQRMDMLVYQTNDIELAELISGEEEALIEEKNLLVNYQRIVGALSVSYDALQGE
EGSGVDLIGTAMTEMSTIDSLDESYRQISENIANSYFQLQEAASEILREMDQLAYDEERLNEIEKRLDFIQQMKRKYGES
VQEVLDYYEKIIVELDQIQNRETHMNELISQLGMLSKSLSEKAETVSLKRQEIARLLEKEIHEQLKELYMEKVIFEVRFL
ATEKAGEMKTFNEKGQDIVEFYIATNPGEPLKPLAKVASGGELSRMMLAMKTIFSKSQGITSIIFDEVDTGVSGRVAQAI
ANKIYLVAIHSQVLCITHLPQVAAMADHHLFISKTQVDERTETHVTALQQKEKVQEVARMLAGTEITKLTIEHAKELLKL
AKTEKEKYNSI

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=1159502 QOS94_RS05950 WP_016356502.1 1288339..1290054(+) (recN) [Carnobacterium maltaromaticum strain SF2022 isolate SF2022]
GTGCTACAAGAGTTAGCAATTAAAAATTTTGCAATCATTCATGATTTGTCTTTAAGCTTTGAAACAGGAATGACCGTTTT
AACTGGTGAAACTGGGGCTGGTAAATCGATTATTATTGATGCCGTTGGTTTACTAGCAGGTGGCCGTGCTTCAAGTGATT
TTATTCGTCATGGTGAAAATAAATGCGTCTTAGAAGGATTATTTACGTTAAATAAGGATGCTCTTACTTTTGAATTATTA
AAAGAATTTGATATTGATTTTGAAGATGAAACCGTCTTAATTCAACGTTATATTCATCGAAATGGTAAAAATGTTTGTCG
AATTAATGGTAGACTGGTTACGATTGCGACGTTACGCTTAATTGGAGAAACAATGATTGATATTCATGGTCAGAATGAAC
ATCAAGAACTAATGAATCCTGAGCGACATTTAGATATGTTGGATCAATTCGGTGATCAAGAGTTAGTTCAGCTATTGACG
GACTACGATTCTACTTATGTAGAGTACCAAAAAGTAAAAAAAGCCTATGACAAATGGCAAAGTAGTGAACAAGAATTAGC
TCAACGAATGGATATGCTTGTGTACCAAACAAACGATATTGAATTAGCTGAGCTCATTTCTGGAGAAGAAGAAGCACTAA
TAGAAGAAAAAAATTTATTGGTTAATTATCAGCGGATTGTTGGTGCTTTATCTGTTAGTTACGATGCACTTCAAGGTGAA
GAAGGCAGTGGTGTTGATTTAATAGGAACAGCTATGACTGAAATGAGCACAATAGATTCTCTAGATGAAAGCTATCGCCA
AATTTCAGAAAATATTGCAAACAGTTACTTCCAATTGCAAGAAGCAGCTAGTGAAATTTTAAGGGAAATGGATCAATTAG
CTTATGATGAAGAGCGTTTAAATGAAATTGAAAAACGCTTAGACTTTATTCAACAAATGAAGCGTAAGTACGGAGAAAGT
GTTCAAGAAGTTCTTGATTATTACGAAAAAATTATTGTTGAATTGGATCAAATTCAAAATCGTGAGACACATATGAATGA
ACTGATTAGCCAATTAGGAATGCTGTCTAAAAGTTTATCGGAAAAAGCAGAAACTGTTTCGCTTAAAAGACAGGAAATTG
CTCGACTTTTAGAAAAAGAAATTCATGAGCAACTAAAAGAGTTATATATGGAAAAAGTAATCTTTGAAGTTCGATTTTTA
GCAACTGAAAAAGCTGGTGAAATGAAAACATTTAATGAAAAAGGCCAAGATATCGTGGAATTTTATATTGCAACAAACCC
AGGAGAGCCGCTAAAACCTTTAGCAAAAGTTGCCTCTGGTGGAGAACTTTCACGAATGATGTTAGCGATGAAAACTATTT
TTTCTAAGTCACAAGGAATTACAAGTATTATATTTGATGAAGTAGATACAGGGGTTAGCGGTAGAGTCGCACAAGCAATT
GCCAATAAAATTTACTTGGTGGCAATCCATTCACAGGTTTTATGTATTACACATTTGCCACAGGTTGCGGCAATGGCAGA
TCATCATTTGTTTATTTCAAAAACACAAGTTGATGAGCGAACTGAAACTCATGTGACGGCATTGCAACAAAAGGAAAAAG
TTCAAGAAGTGGCTAGAATGTTAGCTGGAACTGAAATTACAAAGTTAACGATTGAACACGCTAAAGAATTACTAAAATTA
GCAAAAACTGAAAAAGAAAAATACAATTCTATCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K8ESQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.053

99.825

0.51

Multiple sequence alignment