Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QOS64_RS00250 Genome accession   NZ_OX460973
Coordinates   45554..45844 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40554..50844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS64_RS00210 darA 40571..40900 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  QOS64_RS00215 - 40913..41353 (+) 441 WP_004264730.1 DUF327 family protein -
  QOS64_RS00220 holB 41365..42354 (+) 990 WP_168985384.1 DNA polymerase III subunit delta' -
  QOS64_RS00225 ricT 42357..43184 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  QOS64_RS00230 yabA 43199..43558 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  QOS64_RS00235 - 43619..44362 (+) 744 WP_015239018.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QOS64_RS00240 - 44349..44648 (+) 300 WP_060561981.1 GIY-YIG nuclease family protein -
  QOS64_RS00245 rsmI 44623..45504 (+) 882 WP_011996168.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QOS64_RS00250 abrB 45554..45844 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  QOS64_RS00255 metG 46328..48319 (+) 1992 WP_060561979.1 methionine--tRNA ligase -
  QOS64_RS00260 - 48395..49162 (+) 768 WP_029326250.1 TatD family hydrolase -
  QOS64_RS00265 - 49297..50622 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=1159412 QOS64_RS00250 WP_169510469.1 45554..45844(-) (abrB) [Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=1159412 QOS64_RS00250 WP_169510469.1 45554..45844(-) (abrB) [Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment