Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RG35_RS07035 Genome accession   NZ_CP010137
Coordinates   1365278..1365793 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain D2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1360278..1370793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG35_RS06990 (RG35_06650) csrA 1360865..1361050 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  RG35_RS07020 (RG35_06680) yqaB 1362508..1363074 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RG35_RS07025 (RG35_06685) yqaA 1363071..1363499 (+) 429 WP_001287454.1 YqaA family protein -
  RG35_RS07030 (RG35_06690) gshA 1363572..1365128 (+) 1557 WP_000611812.1 glutamate--cysteine ligase -
  RG35_RS07035 (RG35_06695) luxS 1365278..1365793 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  RG35_RS07040 (RG35_06700) emrB 1365857..1367395 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  RG35_RS07045 (RG35_06705) emrA 1367412..1368584 (-) 1173 WP_073544134.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  RG35_RS07050 (RG35_06710) emrR 1368711..1369241 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  RG35_RS07055 (RG35_06715) ygaH 1369332..1369667 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  RG35_RS07060 (RG35_06720) ygaZ 1369657..1370394 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=115929 RG35_RS07035 WP_001130211.1 1365278..1365793(+) (luxS) [Escherichia coli strain D2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=115929 RG35_RS07035 WP_001130211.1 1365278..1365793(+) (luxS) [Escherichia coli strain D2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731