Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RG34_RS21070 Genome accession   NZ_CP010134
Coordinates   4057015..4057530 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain D1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4052015..4062530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG34_RS21045 (RG34_19870) ygaZ 4052414..4053151 (+) 738 WP_069914977.1 L-valine exporter subunit YgaZ -
  RG34_RS21050 (RG34_19875) ygaH 4053141..4053476 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  RG34_RS21055 (RG34_19880) emrR 4053567..4054097 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  RG34_RS21060 (RG34_19885) emrA 4054224..4055396 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  RG34_RS21065 (RG34_19890) emrB 4055413..4056951 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  RG34_RS21070 (RG34_19895) luxS 4057015..4057530 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  RG34_RS21075 (RG34_19900) gshA 4057680..4059236 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  RG34_RS21080 (RG34_19905) yqaA 4059309..4059737 (-) 429 WP_001287454.1 YqaA family protein -
  RG34_RS21085 (RG34_19910) yqaB 4059734..4060300 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RG34_RS21100 (RG34_19925) csrA 4061069..4061254 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=115878 RG34_RS21070 WP_001130207.1 4057015..4057530(-) (luxS) [Escherichia coli strain D1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=115878 RG34_RS21070 WP_001130207.1 4057015..4057530(-) (luxS) [Escherichia coli strain D1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731