Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QGT44_RS15195 Genome accession   NZ_OX460342
Coordinates   2898137..2898766 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC0880B isolate EC0880B_C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2893137..2903766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGT44_RS15180 helD 2893379..2895433 (-) 2055 WP_001315388.1 DNA helicase IV -
  QGT44_RS15185 yccF 2895556..2896002 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QGT44_RS15190 yccS 2896012..2898174 (+) 2163 WP_000875044.1 YccS family putative transporter -
  QGT44_RS15195 sxy/tfoX 2898137..2898766 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QGT44_RS15200 sulA 2898985..2899494 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QGT44_RS15205 ompA 2899851..2900903 (+) 1053 WP_000750419.1 porin OmpA -
  QGT44_RS15210 matP 2900978..2901430 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  QGT44_RS15215 ycbZ 2901616..2903376 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1158703 QGT44_RS15195 WP_000839153.1 2898137..2898766(-) (sxy/tfoX) [Escherichia coli strain EC0880B isolate EC0880B_C]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1158703 QGT44_RS15195 WP_000839153.1 2898137..2898766(-) (sxy/tfoX) [Escherichia coli strain EC0880B isolate EC0880B_C]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment