Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QGS85_RS14540 Genome accession   NZ_OX460329
Coordinates   2926401..2927030 (-) Length   209 a.a.
NCBI ID   WP_000699018.1    Uniprot ID   A0A8S7S1H1
Organism   Escherichia coli strain EC0026B isolate EC0026B_C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2921401..2932030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGS85_RS14525 helD 2921643..2923697 (-) 2055 WP_001295354.1 DNA helicase IV -
  QGS85_RS14530 yccF 2923820..2924266 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QGS85_RS14535 yccS 2924276..2926438 (+) 2163 WP_000875061.1 YccS family putative transporter -
  QGS85_RS14540 sxy/tfoX 2926401..2927030 (-) 630 WP_000699018.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QGS85_RS14545 sulA 2927249..2927758 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QGS85_RS14550 ompA 2928115..2929155 (+) 1041 WP_000750416.1 porin OmpA -
  QGS85_RS14555 matP 2929231..2929683 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QGS85_RS14560 ycbZ 2929869..2931629 (+) 1761 WP_000156531.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.10 Da        Isoelectric Point: 9.2180

>NTDB_id=1158640 QGS85_RS14540 WP_000699018.1 2926401..2927030(-) (sxy/tfoX) [Escherichia coli strain EC0026B isolate EC0026B_C]
MKILSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1158640 QGS85_RS14540 WP_000699018.1 2926401..2927030(-) (sxy/tfoX) [Escherichia coli strain EC0026B isolate EC0026B_C]
ATGAAAATCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment