Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QGS89_RS15215 Genome accession   NZ_OX460315
Coordinates   2902426..2903055 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC0880B isolate EC0880B_R4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2897426..2908055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGS89_RS15200 helD 2897668..2899722 (-) 2055 WP_001315388.1 DNA helicase IV -
  QGS89_RS15205 yccF 2899845..2900291 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QGS89_RS15210 yccS 2900301..2902463 (+) 2163 WP_000875044.1 YccS family putative transporter -
  QGS89_RS15215 sxy/tfoX 2902426..2903055 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QGS89_RS15220 sulA 2903274..2903783 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QGS89_RS15225 ompA 2904140..2905192 (+) 1053 WP_000750419.1 porin OmpA -
  QGS89_RS15230 matP 2905267..2905719 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  QGS89_RS15235 ycbZ 2905905..2907665 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1158533 QGS89_RS15215 WP_000839153.1 2902426..2903055(-) (sxy/tfoX) [Escherichia coli strain EC0880B isolate EC0880B_R4]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1158533 QGS89_RS15215 WP_000839153.1 2902426..2903055(-) (sxy/tfoX) [Escherichia coli strain EC0880B isolate EC0880B_R4]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment