Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QM512_RS07520 Genome accession   NZ_OX443569
Coordinates   1536263..1538074 (+) Length   603 a.a.
NCBI ID   WP_282805109.1    Uniprot ID   -
Organism   Lactobacillus isalae strain AMBV1719     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1531263..1543074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM512_RS07495 - 1531627..1532409 (-) 783 WP_282805105.1 threonine/serine exporter family protein -
  QM512_RS07500 - 1532427..1533974 (-) 1548 WP_282805106.1 ABC-F family ATP-binding cassette domain-containing protein -
  QM512_RS07505 - 1533971..1534375 (-) 405 WP_282805107.1 hypothetical protein -
  QM512_RS07510 - 1534601..1534870 (+) 270 WP_282805108.1 hypothetical protein -
  QM512_RS07515 - 1534975..1536099 (-) 1125 WP_257587671.1 LCP family protein -
  QM512_RS07520 pepF 1536263..1538074 (+) 1812 WP_282805109.1 oligoendopeptidase F Regulator
  QM512_RS07525 - 1538133..1538660 (-) 528 WP_282805110.1 Rpn family recombination-promoting nuclease/putative transposase -
  QM512_RS07530 - 1538788..1539234 (-) 447 WP_282805111.1 hypothetical protein -
  QM512_RS07535 - 1539422..1539826 (-) 405 WP_282805112.1 hypothetical protein -
  QM512_RS07540 - 1539842..1540297 (-) 456 WP_282805113.1 hypothetical protein -
  QM512_RS07545 - 1540347..1541051 (-) 705 WP_282805114.1 DUF6287 domain-containing protein -
  QM512_RS07550 - 1541079..1541747 (-) 669 WP_282805115.1 hypothetical protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69096.07 Da        Isoelectric Point: 4.6831

>NTDB_id=1158390 QM512_RS07520 WP_282805109.1 1536263..1538074(+) (pepF) [Lactobacillus isalae strain AMBV1719]
MTLPTRNEVSDDLKWDLSRVFKNDQEWEQEYNQVAKEIKNLNKFKGMLAKSGKNLYEGITEILAVNRRLEKVYVYATMSS
DVDTKNTHYLGLVAKAQSLANQMSAAIAFVDPEILSIPEETLATFMQDEPRLENYRHRLEQITQKRPHTLPANEEKIIAD
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNIRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNARVHKYNSAREASLSENGVPTTVYDTLIKEVNSHLNLLHRYVSLRKKILGLKDLQMYDMYVPLTGEPVLSYNFNEA
KEEARKALAPLGEDYLKHVDYIFNNRVIDIVESQNKVTGAYSGGAYDTDPYELLNWENNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHETDANGQPLTA
DVLDEFYGNLNQRYYGDSVEPGGEIAMEWARIPHFYYNFYVYQYATGFAAATALANKVVHGTDKERDAYINFLKSGSSDY
PTEIMKRAGVDMTKADYLRDAFDTFEKRLNEFEKIVDELNAEK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=1158390 QM512_RS07520 WP_282805109.1 1536263..1538074(+) (pepF) [Lactobacillus isalae strain AMBV1719]
ATGACTCTTCCAACAAGAAATGAAGTATCTGATGACCTCAAATGGGACTTAAGTCGTGTTTTTAAAAACGATCAAGAATG
GGAACAAGAATATAATCAAGTCGCTAAAGAAATCAAAAATCTAAATAAATTCAAAGGAATGCTAGCTAAGTCTGGTAAAA
ATCTTTACGAAGGAATCACAGAAATCCTAGCAGTAAATCGACGCCTTGAAAAGGTGTATGTTTACGCTACAATGTCAAGC
GACGTCGATACAAAAAATACTCATTACCTTGGTTTAGTGGCTAAAGCTCAAAGCTTAGCTAACCAAATGAGTGCTGCGAT
TGCTTTCGTTGATCCTGAAATCTTATCTATTCCAGAAGAAACACTTGCCACGTTCATGCAAGACGAACCACGTTTAGAAA
ATTATCGGCACCGTCTTGAGCAAATTACGCAAAAGCGTCCTCATACTCTACCAGCAAATGAAGAAAAAATCATCGCTGAC
GCCGGAGATGCAATGGGTACATCTGCTAACACCTTCAATGTCTTAACTAATTCTGATATGGAATATGGGTATGTACAAGA
CGAAGATGGCGAAATGGTTCAATTATCTGACGGCTTATATTCGCTTTTAATCCAATCTCAAGACCGTAATATTCGTAAAA
ATGCCTTTGACGTAATGTACGCAAGCTACGGTCAGTTTGAAAACAGTCTCGCTTCAACTTTATCAGGTGAGGTAAAGGCT
CACAATTTTAATGCTCGAGTACACAAATATAATTCAGCTAGAGAAGCTTCTTTAAGTGAGAATGGTGTTCCAACAACCGT
TTACGACACATTAATTAAAGAAGTAAATAGTCACCTTAATTTACTTCACCGCTACGTTTCATTAAGAAAGAAAATTTTGG
GCTTAAAAGATCTTCAAATGTACGATATGTATGTTCCGTTAACTGGTGAACCTGTCCTTTCTTATAACTTTAACGAAGCA
AAAGAAGAAGCTAGAAAGGCCTTAGCTCCACTAGGAGAAGACTATTTAAAGCACGTTGATTACATTTTTAATAACCGCGT
AATTGATATAGTTGAAAGTCAAAATAAAGTAACTGGTGCATATTCAGGTGGTGCCTACGATACTGATCCATACGAACTAC
TTAACTGGGAAAATAACCTTGATTCACTCTATACTCTAGTTCACGAAACTGGTCACTCTGTCCACTCTTGGTATACAAGA
AACACTCAACCTTACGTCTACGGTGATTATCCAATTTTTGTTGCTGAAATTGCTTCAACTACTAACGAAAATATTTTAAC
CGAGTATTTCTTAGACAAGATTACTGACCCTAAAACTAGGGCTTTTGTCTTGAACCATTATCTTGATTCATTTAAGGGGA
CTCTTTTCCGTCAAACTCAATTTGCGGAATTTGAACAATTTATTCATGAAACTGATGCTAATGGACAACCATTAACTGCT
GATGTACTTGATGAATTTTATGGCAACTTAAACCAAAGATATTATGGAGATAGCGTAGAACCTGGTGGAGAAATTGCTAT
GGAATGGGCACGTATTCCTCACTTCTACTACAACTTCTACGTTTACCAATACGCAACAGGTTTTGCGGCTGCAACTGCTC
TTGCCAATAAAGTTGTTCACGGCACTGACAAAGAACGTGATGCTTATATTAATTTCTTAAAATCAGGTTCTTCGGATTAC
CCAACAGAAATTATGAAACGAGCTGGCGTTGATATGACTAAGGCTGATTACTTGAGGGATGCTTTTGATACTTTTGAAAA
GCGTCTTAATGAATTTGAAAAAATTGTAGATGAATTAAACGCTGAAAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.347

98.507

0.506

Multiple sequence alignment