Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | QM512_RS00020 | Genome accession | NZ_OX443569 |
| Coordinates | 4295..5674 (+) | Length | 459 a.a. |
| NCBI ID | WP_282805536.1 | Uniprot ID | - |
| Organism | Lactobacillus isalae strain AMBV1719 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1..10674
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QM512_RS00010 | pepC | 2212..3561 (-) | 1350 | WP_282805534.1 | aminopeptidase C | - |
| QM512_RS00015 | - | 3744..4295 (+) | 552 | WP_282805535.1 | dUTP diphosphatase | - |
| QM512_RS00020 | radA | 4295..5674 (+) | 1380 | WP_282805536.1 | DNA repair protein RadA | Machinery gene |
| QM512_RS00025 | gltX | 5756..7255 (+) | 1500 | WP_278750011.1 | glutamate--tRNA ligase | - |
| QM512_RS00030 | cysS | 7350..8762 (+) | 1413 | WP_282805537.1 | cysteine--tRNA ligase | - |
| QM512_RS00035 | - | 8755..9198 (+) | 444 | WP_282805538.1 | Mini-ribonuclease 3 | - |
| QM512_RS00040 | rlmB | 9185..9940 (+) | 756 | WP_282805539.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
Sequence
Protein
Download Length: 459 a.a. Molecular weight: 50174.75 Da Isoelectric Point: 7.0185
>NTDB_id=1158380 QM512_RS00020 WP_282805536.1 4295..5674(+) (radA) [Lactobacillus isalae strain AMBV1719]
MAKVKTRYKCRNCGYISASYLGRCPNCGAWNQFEEETQEVKKVSTKATASRLMTKVGNNDPVKLNEVKAEKEKRIVTPFE
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQITGTLAKEHTVLYVSGEESASQIKMRADRLGVSDSGILLYPETNMQNI
REQIDEIKPDFLVIDSIQTMNEPSLDSMVGSASQVREVTSELMKIAKNDQITTFVIGHVTKEGAIAGPKIMEHMVDTVLY
FEGDGHHSYRILRSVKNRFGAANEIGMFEMKNEGLTEVNNPSAIFLDERLPNSTGSAVVVSLEGTRPLLADIQALVTPTA
FGYAKRTTSGLDFNRVALLLAVLEKRGNLMLQNQDAFLTATGGIKLNEPAIDLAMCMAVASSYKNKEISSTDCFVGEVGL
TGEIRRVNQIETRVKEAAKVGFKRVFIPKHNLNADLMNNPDIEVIGVASLPQALKLVFN
MAKVKTRYKCRNCGYISASYLGRCPNCGAWNQFEEETQEVKKVSTKATASRLMTKVGNNDPVKLNEVKAEKEKRIVTPFE
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQITGTLAKEHTVLYVSGEESASQIKMRADRLGVSDSGILLYPETNMQNI
REQIDEIKPDFLVIDSIQTMNEPSLDSMVGSASQVREVTSELMKIAKNDQITTFVIGHVTKEGAIAGPKIMEHMVDTVLY
FEGDGHHSYRILRSVKNRFGAANEIGMFEMKNEGLTEVNNPSAIFLDERLPNSTGSAVVVSLEGTRPLLADIQALVTPTA
FGYAKRTTSGLDFNRVALLLAVLEKRGNLMLQNQDAFLTATGGIKLNEPAIDLAMCMAVASSYKNKEISSTDCFVGEVGL
TGEIRRVNQIETRVKEAAKVGFKRVFIPKHNLNADLMNNPDIEVIGVASLPQALKLVFN
Nucleotide
Download Length: 1380 bp
>NTDB_id=1158380 QM512_RS00020 WP_282805536.1 4295..5674(+) (radA) [Lactobacillus isalae strain AMBV1719]
ATGGCAAAAGTTAAAACACGTTATAAGTGTCGTAATTGTGGGTATATCTCTGCTTCTTATTTAGGAAGATGCCCAAACTG
CGGTGCTTGGAACCAATTTGAAGAAGAGACACAAGAAGTAAAAAAAGTATCAACTAAGGCAACTGCCAGTCGATTGATGA
CTAAAGTTGGTAATAATGATCCAGTAAAATTAAACGAAGTAAAAGCTGAAAAGGAAAAAAGGATTGTAACACCTTTTGAA
GAATTAAATCGAGTTCTAGGAGGCGGAATTGTTCCAGGTTCTTTAGTTTTAATTGGTGGAGATCCTGGAATTGGAAAATC
CACCTTAATGCTCCAAATTACTGGTACTTTAGCTAAAGAACATACTGTTTTATACGTATCAGGGGAAGAATCTGCTAGTC
AAATAAAGATGAGAGCAGATCGGTTAGGTGTTAGTGATAGTGGAATTTTGCTTTATCCTGAAACAAATATGCAAAATATT
CGAGAGCAAATCGATGAAATTAAACCAGATTTCTTAGTAATTGATTCTATCCAAACAATGAATGAGCCATCTCTTGATTC
AATGGTTGGTTCTGCTTCTCAAGTTCGTGAAGTAACAAGTGAATTAATGAAAATTGCAAAGAATGATCAAATTACGACTT
TTGTTATTGGGCATGTAACTAAAGAGGGGGCAATTGCTGGTCCTAAGATTATGGAACATATGGTTGATACGGTTCTCTAT
TTTGAAGGCGACGGCCACCATTCATATCGAATTTTGAGGTCAGTTAAAAATCGTTTTGGTGCAGCTAACGAAATTGGTAT
GTTTGAAATGAAAAATGAAGGGTTAACTGAGGTAAACAATCCTTCTGCAATCTTTTTAGACGAGCGCTTGCCAAATTCGA
CTGGTTCGGCAGTCGTGGTCTCTCTTGAAGGAACAAGGCCACTTTTAGCTGATATTCAGGCTTTAGTTACTCCAACTGCC
TTTGGATATGCTAAGAGAACAACTTCAGGATTAGATTTTAATCGTGTAGCACTTTTGTTAGCTGTTTTAGAAAAACGCGG
CAACCTAATGCTCCAAAATCAGGATGCGTTTTTAACGGCCACAGGCGGAATAAAATTAAATGAACCAGCAATTGATCTAG
CAATGTGTATGGCAGTTGCTTCTAGCTATAAAAATAAAGAAATTTCTTCAACAGATTGCTTTGTAGGCGAAGTTGGCCTG
ACTGGGGAAATTAGAAGAGTTAATCAAATTGAAACAAGAGTCAAAGAAGCCGCAAAAGTAGGTTTTAAGCGTGTTTTTAT
TCCAAAACATAATTTGAATGCGGACCTTATGAACAATCCTGATATTGAAGTAATTGGAGTAGCAAGTTTACCTCAGGCTT
TAAAACTTGTTTTTAACTAG
ATGGCAAAAGTTAAAACACGTTATAAGTGTCGTAATTGTGGGTATATCTCTGCTTCTTATTTAGGAAGATGCCCAAACTG
CGGTGCTTGGAACCAATTTGAAGAAGAGACACAAGAAGTAAAAAAAGTATCAACTAAGGCAACTGCCAGTCGATTGATGA
CTAAAGTTGGTAATAATGATCCAGTAAAATTAAACGAAGTAAAAGCTGAAAAGGAAAAAAGGATTGTAACACCTTTTGAA
GAATTAAATCGAGTTCTAGGAGGCGGAATTGTTCCAGGTTCTTTAGTTTTAATTGGTGGAGATCCTGGAATTGGAAAATC
CACCTTAATGCTCCAAATTACTGGTACTTTAGCTAAAGAACATACTGTTTTATACGTATCAGGGGAAGAATCTGCTAGTC
AAATAAAGATGAGAGCAGATCGGTTAGGTGTTAGTGATAGTGGAATTTTGCTTTATCCTGAAACAAATATGCAAAATATT
CGAGAGCAAATCGATGAAATTAAACCAGATTTCTTAGTAATTGATTCTATCCAAACAATGAATGAGCCATCTCTTGATTC
AATGGTTGGTTCTGCTTCTCAAGTTCGTGAAGTAACAAGTGAATTAATGAAAATTGCAAAGAATGATCAAATTACGACTT
TTGTTATTGGGCATGTAACTAAAGAGGGGGCAATTGCTGGTCCTAAGATTATGGAACATATGGTTGATACGGTTCTCTAT
TTTGAAGGCGACGGCCACCATTCATATCGAATTTTGAGGTCAGTTAAAAATCGTTTTGGTGCAGCTAACGAAATTGGTAT
GTTTGAAATGAAAAATGAAGGGTTAACTGAGGTAAACAATCCTTCTGCAATCTTTTTAGACGAGCGCTTGCCAAATTCGA
CTGGTTCGGCAGTCGTGGTCTCTCTTGAAGGAACAAGGCCACTTTTAGCTGATATTCAGGCTTTAGTTACTCCAACTGCC
TTTGGATATGCTAAGAGAACAACTTCAGGATTAGATTTTAATCGTGTAGCACTTTTGTTAGCTGTTTTAGAAAAACGCGG
CAACCTAATGCTCCAAAATCAGGATGCGTTTTTAACGGCCACAGGCGGAATAAAATTAAATGAACCAGCAATTGATCTAG
CAATGTGTATGGCAGTTGCTTCTAGCTATAAAAATAAAGAAATTTCTTCAACAGATTGCTTTGTAGGCGAAGTTGGCCTG
ACTGGGGAAATTAGAAGAGTTAATCAAATTGAAACAAGAGTCAAAGAAGCCGCAAAAGTAGGTTTTAAGCGTGTTTTTAT
TCCAAAACATAATTTGAATGCGGACCTTATGAACAATCCTGATATTGAAGTAATTGGAGTAGCAAGTTTACCTCAGGCTT
TAAAACTTGTTTTTAACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Streptococcus mitis SK321 |
59.913 |
100 |
0.599 |
| radA | Streptococcus pneumoniae D39 |
59.825 |
99.782 |
0.597 |
| radA | Streptococcus pneumoniae R6 |
59.825 |
99.782 |
0.597 |
| radA | Streptococcus pneumoniae Rx1 |
59.825 |
99.782 |
0.597 |
| radA | Streptococcus mitis NCTC 12261 |
59.825 |
99.782 |
0.597 |
| radA | Streptococcus pneumoniae TIGR4 |
59.825 |
99.782 |
0.597 |
| radA | Bacillus subtilis subsp. subtilis str. 168 |
55.58 |
99.564 |
0.553 |