Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   P4E82_RS05575 Genome accession   NZ_OX442413
Coordinates   1111235..1111681 (-) Length   148 a.a.
NCBI ID   WP_318764326.1    Uniprot ID   -
Organism   Campylobacter coli isolate pure strain     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1106235..1116681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4E82_RS05560 - 1108041..1108649 (+) 609 WP_002781606.1 gamma-glutamyl-CDP-amidate hydrolase -
  P4E82_RS05565 - 1108646..1109416 (+) 771 WP_002781608.1 sugar phosphate nucleotidyltransferase -
  P4E82_RS05570 - 1109400..1111238 (-) 1839 WP_318764325.1 primosomal protein N' -
  P4E82_RS05575 Cj0683 1111235..1111681 (-) 447 WP_318764326.1 type II secretion system protein Machinery gene
  P4E82_RS05580 - 1111678..1111923 (-) 246 WP_002776428.1 hypothetical protein -
  P4E82_RS05585 - 1111913..1112143 (-) 231 WP_002776426.1 hypothetical protein -
  P4E82_RS05590 uvrB 1112297..1114270 (+) 1974 WP_318764327.1 excinuclease ABC subunit UvrB -
  P4E82_RS05595 - 1114305..1115729 (-) 1425 WP_002806692.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17271.18 Da        Isoelectric Point: 8.7735

>NTDB_id=1158373 P4E82_RS05575 WP_318764326.1 1111235..1111681(-) (Cj0683) [Campylobacter coli isolate pure strain]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQVELKQISSFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNAKEWVDFFYNANFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1158373 P4E82_RS05575 WP_318764326.1 1111235..1111681(-) (Cj0683) [Campylobacter coli isolate pure strain]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAAAAGAA
AAACTTTTTTACTGCCAAACTAGCCAAAATTGCACTTATTCTTTACTTCACACACCCATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAACCGATATAGATTTTTTTTAAATGCAAAAGAATGGGTTGATTTTTTTTATAATGCCAATTTTG
CTATTTTAGAATGTCTTAGTGAAAAATATTGTAAAGAATTGTTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.784

100

0.588

Multiple sequence alignment