Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   P4E82_RS03610 Genome accession   NZ_OX442413
Coordinates   725047..725784 (-) Length   245 a.a.
NCBI ID   WP_002834520.1    Uniprot ID   -
Organism   Campylobacter coli isolate pure strain     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 720047..730784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4E82_RS03570 - 720160..720921 (+) 762 WP_025431509.1 ATP-binding protein -
  P4E82_RS03575 - 720918..721601 (+) 684 WP_002791740.1 3-methyladenine DNA glycosylase -
  P4E82_RS03580 thiD 721601..722413 (+) 813 WP_002786353.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  P4E82_RS03585 thiE 722403..723035 (+) 633 WP_318764473.1 thiamine phosphate synthase -
  P4E82_RS03590 - 723013..723642 (+) 630 WP_002783358.1 uroporphyrinogen-III synthase -
  P4E82_RS03595 - 723635..724087 (-) 453 WP_002777117.1 hypothetical protein -
  P4E82_RS03600 - 724084..724752 (-) 669 WP_002797569.1 hypothetical protein -
  P4E82_RS03605 ctsT 724745..725050 (-) 306 WP_002834517.1 hypothetical protein Machinery gene
  P4E82_RS03610 proC 725047..725784 (-) 738 WP_002834520.1 pyrroline-5-carboxylate reductase Machinery gene
  P4E82_RS03615 fliW 725784..726173 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  P4E82_RS03620 - 726337..726984 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  P4E82_RS03625 lon 727000..729375 (+) 2376 WP_002783351.1 endopeptidase La -
  P4E82_RS03630 rpsR 729431..729691 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  P4E82_RS03635 - 729702..730250 (-) 549 WP_002777084.1 single-stranded DNA-binding protein -
  P4E82_RS03640 rpsF 730259..730636 (-) 378 WP_002777082.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 26796.25 Da        Isoelectric Point: 9.5957

>NTDB_id=1158371 P4E82_RS03610 WP_002834520.1 725047..725784(-) (proC) [Campylobacter coli isolate pure strain]
MKADLYILANGAMAQALAYGLKDSYNIYIVGRNLEKLQILEKEGFKTLLYKDFNIENKNIILAFKPYALESVAANLKGKA
KILISVLANTDFDKLKLIQAQNYARIMPNTAAKYKASTTPYVLKNSNFKDEVIEILNTFGKAYKLNEEKQMNAAMAISGC
APAFLALVAESIANAGVYEGLSKELSLNLTRSLFKSAAALLENEHPAIIKENICSPAGVTIKGIKVLEQKGIRGTFFEAL
NASAT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=1158371 P4E82_RS03610 WP_002834520.1 725047..725784(-) (proC) [Campylobacter coli isolate pure strain]
ATGAAAGCTGATTTATATATACTTGCTAATGGTGCGATGGCGCAAGCTTTGGCTTATGGATTAAAAGATTCTTATAATAT
CTATATAGTCGGTAGAAATTTAGAAAAGCTTCAAATTTTAGAAAAAGAAGGTTTTAAAACTTTACTCTATAAAGATTTTA
ATATAGAAAATAAAAATATTATCTTAGCTTTTAAACCTTATGCCTTAGAAAGTGTCGCAGCAAATTTAAAAGGCAAGGCA
AAAATTTTAATTTCAGTTTTAGCCAATACGGATTTTGATAAATTAAAACTTATCCAAGCCCAAAATTATGCAAGGATAAT
GCCAAATACAGCAGCTAAATATAAAGCTTCCACAACTCCTTATGTTTTAAAAAATTCAAATTTTAAAGATGAAGTCATAG
AAATTTTAAATACTTTTGGCAAAGCTTATAAGTTAAACGAAGAAAAACAAATGAATGCTGCCATGGCTATAAGCGGTTGC
GCTCCTGCTTTTTTAGCATTAGTAGCTGAAAGCATTGCTAATGCTGGCGTGTATGAAGGATTATCAAAAGAGCTGAGTTT
AAATCTCACTCGTTCGCTTTTTAAAAGTGCTGCAGCCTTGCTAGAAAACGAGCACCCAGCCATCATTAAGGAAAATATCT
GCTCGCCTGCAGGTGTTACCATAAAAGGGATTAAAGTATTAGAGCAAAAAGGTATCCGTGGGACTTTTTTTGAGGCTCTT
AATGCTAGTGCAACATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(7-88)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(148-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

81.25

97.959

0.796

Multiple sequence alignment