Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   P4E82_RS01870 Genome accession   NZ_OX442413
Coordinates   382809..383993 (+) Length   394 a.a.
NCBI ID   WP_318764425.1    Uniprot ID   -
Organism   Campylobacter coli isolate pure strain     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 377809..388993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4E82_RS01860 - 379029..380753 (+) 1725 WP_318764423.1 hypothetical protein -
  P4E82_RS01865 - 380785..382812 (+) 2028 WP_318764424.1 capsular polysaccharide biosynthesis protein -
  P4E82_RS01870 kpsS 382809..383993 (+) 1185 WP_318764425.1 capsule biosynthesis protein Regulator
  P4E82_RS01875 - 384061..385182 (+) 1122 WP_318764426.1 DUF829 domain-containing protein -
  P4E82_RS01880 - 385179..386549 (+) 1371 WP_002783822.1 cytochrome P450 -
  P4E82_RS01885 - 386546..386968 (+) 423 WP_002779166.1 hypothetical protein -
  P4E82_RS01890 acpS 386971..387318 (-) 348 WP_250407462.1 holo-ACP synthase -
  P4E82_RS01895 fliL 387318..387854 (-) 537 WP_002779164.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46542.27 Da        Isoelectric Point: 10.0390

>NTDB_id=1158360 P4E82_RS01870 WP_318764425.1 382809..383993(+) (kpsS) [Campylobacter coli isolate pure strain]
MKFSDKIKKEFSGKNVLLLQGPVGTFFHRLAIKMKKNKAKVLKLNFNGGDFFFYPSGKRCKCDEKDLENFYENFFKEKKI
DAIVMYNDCRLIHAKAIKVAKELGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNISTKESIKEIPGGFKF
MAFSAFLYWLFSFLLAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKLTEKKLNQKIYSLEKKYFLAVLQVYNDTQIKHH
YKKSIEEFIEELILSFANHARAKSYLVFKHHPMDRGYRNYSKLINELSQKYHVEGRILYVHDTYLPTLLKKALGCITINS
TVGLSAILEGCPTKVCGNAFYNFEGLAYPKKLQFFWREAHAYKPNPSLVLNFKNYLLNTNQFNGNFYKNSFLSR

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=1158360 P4E82_RS01870 WP_318764425.1 382809..383993(+) (kpsS) [Campylobacter coli isolate pure strain]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGTGGTAAAAATGTCTTGCTTTTACAAGGACCTGTAGGGACTTTTTT
TCACCGCCTTGCCATAAAGATGAAAAAAAACAAAGCCAAAGTTTTAAAGCTTAATTTTAACGGAGGGGATTTTTTTTTCT
ATCCAAGTGGAAAAAGGTGCAAGTGCGATGAAAAGGATCTAGAAAATTTCTATGAAAATTTTTTCAAAGAGAAAAAAATA
GATGCTATTGTGATGTATAATGATTGTCGTTTGATTCATGCAAAAGCTATCAAAGTAGCTAAGGAGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATTTCTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGCTTTTAGTGCTTTTTTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CCTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATATCTTTATAAACTCACAGAAAAAAAACTTA
ATCAAAAAATTTATAGCCTTGAAAAAAAGTACTTTTTGGCTGTTTTGCAAGTTTATAATGATACGCAAATTAAGCACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTGT
CTTTAAACATCATCCTATGGATAGGGGATATAGGAATTATTCTAAACTGATAAATGAGCTAAGTCAAAAATACCATGTAG
AAGGAAGAATTTTATATGTGCACGATACTTATTTACCCACTCTTTTAAAAAAGGCTTTGGGTTGCATCACGATTAATTCT
ACAGTGGGTTTAAGTGCTATTTTAGAGGGTTGTCCTACTAAGGTTTGTGGAAATGCATTTTACAATTTTGAAGGCCTAGC
TTATCCTAAAAAACTTCAATTTTTTTGGCGCGAAGCTCATGCTTATAAACCCAATCCTAGCTTGGTTTTAAATTTCAAAA
ACTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCTTTTTTAAGTCGATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

88.071

100

0.881

Multiple sequence alignment