Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   P9C33_RS15275 Genome accession   NZ_OX442407
Coordinates   3097679..3098308 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate pure strain     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3092679..3103308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9C33_RS15260 helD 3092921..3094975 (-) 2055 WP_000420533.1 DNA helicase IV -
  P9C33_RS15265 yccF 3095098..3095544 (+) 447 WP_001261231.1 YccF domain-containing protein -
  P9C33_RS15270 yccS 3095554..3097716 (+) 2163 WP_000875023.1 YccS family putative transporter -
  P9C33_RS15275 sxy/tfoX 3097679..3098308 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  P9C33_RS15280 sulA 3098527..3099036 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  P9C33_RS15285 ompA 3099393..3100445 (+) 1053 WP_000750419.1 porin OmpA -
  P9C33_RS15290 matP 3100521..3100973 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  P9C33_RS15295 ycbZ 3101159..3102919 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1158323 P9C33_RS15275 WP_000839153.1 3097679..3098308(-) (sxy/tfoX) [Escherichia coli isolate pure strain]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1158323 P9C33_RS15275 WP_000839153.1 3097679..3098308(-) (sxy/tfoX) [Escherichia coli isolate pure strain]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment