Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QOR53_RS05900 Genome accession   NZ_OX437061
Coordinates   1119224..1120183 (+) Length   319 a.a.
NCBI ID   WP_002875425.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1099522..1129520 1119224..1120183 within 0


Gene organization within MGE regions


Location: 1099522..1129520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR53_RS05810 pglI 1099522..1100451 (-) 930 WP_002890470.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  QOR53_RS05815 pglH 1100444..1101523 (-) 1080 WP_002859237.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  QOR53_RS05820 pglK 1101520..1103214 (-) 1695 WP_002890469.1 ABC-type lipopolysaccharide transporter PglK -
  QOR53_RS05825 galE 1103208..1104194 (-) 987 WP_002853529.1 UDP-glucose 4-epimerase GalE -
  QOR53_RS05830 - 1104252..1105046 (-) 795 WP_002853812.1 3'-5' exonuclease -
  QOR53_RS05835 waaC 1105112..1106140 (+) 1029 WP_002855693.1 lipopolysaccharide heptosyltransferase I -
  QOR53_RS05840 htrB 1106130..1107017 (+) 888 WP_002890465.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  QOR53_RS05845 - 1107014..1108561 (+) 1548 WP_002858148.1 glycosyltransferase -
  QOR53_RS05850 - 1108565..1109737 (+) 1173 WP_002858013.1 glycosyltransferase family 2 protein -
  QOR53_RS05855 - 1109721..1110716 (-) 996 WP_002858358.1 capsular polysaccharide synthesis protein -
  QOR53_RS05860 - 1110774..1111943 (+) 1170 WP_002858320.1 glycosyltransferase family 2 protein -
  QOR53_RS05865 wlaN 1111932..1112844 (-) 913 Protein_1138 beta-1,3 galactosyltransferase -
  QOR53_RS05870 cstIII 1112900..1113784 (+) 885 WP_002858290.1 alpha-2,3-sialyltransferase -
  QOR53_RS05875 neuB1 1113765..1114796 (+) 1032 WP_002858213.1 sialic acid synthase -
  QOR53_RS05880 neuC 1114793..1115908 (+) 1116 WP_002858400.1 UDP-N-acetylglucosamine 2-epimerase -
  QOR53_RS09360 - 1115905..1116819 (+) 915 Protein_1142 beta-1,4-N-acetylgalactosaminyltransferase -
  QOR53_RS09365 - 1116853..1117515 (+) 663 WP_002881429.1 N-acylneuraminate cytidylyltransferase -
  QOR53_RS05890 - 1117510..1118357 (-) 848 Protein_1144 glycosyltransferase -
  QOR53_RS05895 waaV 1118341..1119165 (-) 825 WP_002858096.1 glycosyltransferase family 2 protein -
  QOR53_RS05900 waaF 1119224..1120183 (+) 960 WP_002875425.1 lipopolysaccharide heptosyltransferase II Regulator
  QOR53_RS05905 gmhA 1120164..1120724 (-) 561 WP_002858021.1 D-sedoheptulose 7-phosphate isomerase -
  QOR53_RS05910 rfaE1 1120721..1122106 (-) 1386 WP_002890180.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  QOR53_RS05915 rfaD 1122099..1123052 (-) 954 WP_002852832.1 ADP-glyceromanno-heptose 6-epimerase -
  QOR53_RS05920 gmhB 1123053..1123613 (-) 561 WP_002878815.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  QOR53_RS05925 - 1123695..1123997 (+) 303 WP_002852762.1 cytochrome c -
  QOR53_RS05930 ccoS 1124020..1124226 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  QOR53_RS05935 - 1124223..1126580 (-) 2358 WP_072224466.1 heavy metal translocating P-type ATPase -
  QOR53_RS05940 rho 1126689..1127987 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  QOR53_RS05945 dnaX 1127991..1129520 (+) 1530 WP_002875420.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36734.30 Da        Isoelectric Point: 10.2412

>NTDB_id=1158270 QOR53_RS05900 WP_002875425.1 1119224..1120183(+) (waaF) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=1158270 QOR53_RS05900 WP_002875425.1 1119224..1120183(+) (waaF) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment