Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   QNH83_RS08045 Genome accession   NZ_OX437060
Coordinates   1517258..1517845 (-) Length   195 a.a.
NCBI ID   WP_002851370.1    Uniprot ID   A0AB36G4D4
Organism   Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1512258..1522845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH83_RS08025 - 1513008..1513772 (+) 765 WP_002851318.1 TIGR02757 family protein -
  QNH83_RS08030 - 1513776..1514539 (+) 764 Protein_1567 TSUP family transporter -
  QNH83_RS08035 ctsF 1514532..1515713 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  QNH83_RS08040 ctsE 1515710..1517268 (-) 1559 Protein_1569 GspE/PulE family protein -
  QNH83_RS08045 ctsX 1517258..1517845 (-) 588 WP_002851370.1 membrane protein Machinery gene
  QNH83_RS08050 ctsP 1517849..1518457 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  QNH83_RS08055 ctsD 1518450..1519862 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QNH83_RS08060 ctsR 1519840..1520151 (-) 312 WP_015016496.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23359.43 Da        Isoelectric Point: 9.8409

>NTDB_id=1158252 QNH83_RS08045 WP_002851370.1 1517258..1517845(-) (ctsX) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1158252 QNH83_RS08045 WP_002851370.1 1517258..1517845(-) (ctsX) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAGG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGTGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment