Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   QNH83_RS03360 Genome accession   NZ_OX437060
Coordinates   636793..637230 (+) Length   145 a.a.
NCBI ID   WP_282950572.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 631793..642230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH83_RS03330 - 632290..632802 (+) 513 WP_250484727.1 hypothetical protein -
  QNH83_RS03335 - 632843..633751 (+) 909 WP_250484729.1 DUF4118 domain-containing protein -
  QNH83_RS03340 - 633959..634105 (+) 147 WP_224168554.1 hypothetical protein -
  QNH83_RS03345 uvrB 634207..636180 (-) 1974 WP_038816456.1 excinuclease ABC subunit UvrB -
  QNH83_RS03350 - 636334..636564 (+) 231 WP_002852327.1 hypothetical protein -
  QNH83_RS03355 - 636554..636796 (+) 243 WP_002854947.1 hypothetical protein -
  QNH83_RS03360 Cj0683 636793..637230 (+) 438 WP_282950572.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QNH83_RS03365 priA 637212..639065 (+) 1854 WP_002866530.1 primosomal protein N' -
  QNH83_RS03370 cipA 639075..640468 (-) 1394 Protein_653 DUF2972 domain-containing protein -
  QNH83_RS03375 ispG 640614..641687 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16735.67 Da        Isoelectric Point: 8.0993

>NTDB_id=1158237 QNH83_RS03360 WP_282950572.1 636793..637230(+) (Cj0683) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKTDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1158237 QNH83_RS03360 WP_282950572.1 636793..637230(+) (Cj0683) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAACGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993

Multiple sequence alignment