Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QOR50_RS05645 Genome accession   NZ_OX437059
Coordinates   1080543..1081502 (+) Length   319 a.a.
NCBI ID   WP_002875425.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1060836..1093723 1080543..1081502 within 0


Gene organization within MGE regions


Location: 1060836..1093723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR50_RS05555 pglI 1060836..1061765 (-) 930 WP_002890470.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  QOR50_RS05560 pglH 1061758..1062837 (-) 1080 WP_002859237.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  QOR50_RS05565 pglK 1062834..1064528 (-) 1695 WP_002890469.1 ABC-type lipopolysaccharide transporter PglK -
  QOR50_RS05570 galE 1064522..1065508 (-) 987 WP_002853529.1 UDP-glucose 4-epimerase GalE -
  QOR50_RS05575 - 1065566..1066360 (-) 795 WP_002853812.1 3'-5' exonuclease -
  QOR50_RS05580 waaC 1066426..1067454 (+) 1029 WP_002855693.1 lipopolysaccharide heptosyltransferase I -
  QOR50_RS05585 htrB 1067444..1068331 (+) 888 WP_002890465.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  QOR50_RS05590 - 1068328..1069875 (+) 1548 WP_002858148.1 glycosyltransferase -
  QOR50_RS05595 - 1069879..1071051 (+) 1173 WP_002858013.1 glycosyltransferase family 2 protein -
  QOR50_RS05600 - 1071035..1072030 (-) 996 WP_002858358.1 capsular polysaccharide synthesis protein -
  QOR50_RS05605 - 1072088..1073257 (+) 1170 WP_002858320.1 glycosyltransferase family 2 protein -
  QOR50_RS05610 wlaN 1073246..1074158 (-) 913 Protein_1087 beta-1,3 galactosyltransferase -
  QOR50_RS05615 cstIII 1074213..1075097 (+) 885 WP_002858290.1 alpha-2,3-sialyltransferase -
  QOR50_RS05620 neuB1 1075078..1076109 (+) 1032 WP_002858213.1 sialic acid synthase -
  QOR50_RS05625 neuC 1076106..1077221 (+) 1116 WP_002858400.1 UDP-N-acetylglucosamine 2-epimerase -
  QOR50_RS08785 - 1077218..1078132 (+) 915 Protein_1091 beta-1,4-N-acetylgalactosaminyltransferase -
  QOR50_RS08790 - 1078166..1078828 (+) 663 WP_002881429.1 N-acylneuraminate cytidylyltransferase -
  QOR50_RS05635 - 1078823..1079676 (-) 854 Protein_1093 glycosyltransferase -
  QOR50_RS05640 waaV 1079660..1080484 (-) 825 WP_002858096.1 glycosyltransferase family 2 protein -
  QOR50_RS05645 waaF 1080543..1081502 (+) 960 WP_002875425.1 lipopolysaccharide heptosyltransferase II Regulator
  QOR50_RS05650 gmhA 1081483..1082043 (-) 561 WP_002858021.1 D-sedoheptulose 7-phosphate isomerase -
  QOR50_RS05655 rfaE1 1082040..1083425 (-) 1386 WP_002890180.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  QOR50_RS05660 rfaD 1083418..1084371 (-) 954 WP_002852832.1 ADP-glyceromanno-heptose 6-epimerase -
  QOR50_RS05665 gmhB 1084372..1084932 (-) 561 WP_002878815.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  QOR50_RS05670 - 1085014..1085316 (+) 303 WP_002852762.1 cytochrome c -
  QOR50_RS05675 ccoS 1085339..1085545 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  QOR50_RS05680 - 1085542..1087899 (-) 2358 WP_072224466.1 heavy metal translocating P-type ATPase -
  QOR50_RS05685 rho 1088008..1089306 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  QOR50_RS05690 dnaX 1089310..1090839 (+) 1530 WP_002875420.1 DNA polymerase III subunit gamma/tau -
  QOR50_RS05695 - 1090836..1091063 (-) 228 WP_002868592.1 DUF2165 family protein -
  QOR50_RS05700 - 1091179..1091358 (-) 180 WP_002868591.1 DUF2165 family protein -
  QOR50_RS05705 copA 1091430..1093529 (-) 2100 WP_002875419.1 copper-translocating P-type ATPase CopA -
  QOR50_RS05710 - 1093529..1093723 (-) 195 WP_002852760.1 cation transporter -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36734.30 Da        Isoelectric Point: 10.2412

>NTDB_id=1158214 QOR50_RS05645 WP_002875425.1 1080543..1081502(+) (waaF) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=1158214 QOR50_RS05645 WP_002875425.1 1080543..1081502(+) (waaF) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment