Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KJP56_RS14030 Genome accession   NZ_OX419652
Coordinates   2611602..2612369 (-) Length   255 a.a.
NCBI ID   WP_049141200.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6131     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2606602..2617369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP56_RS14010 (NRS6131_13960) ppsR 2606777..2607589 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  KJP56_RS14015 (NRS6131_13965) ccpN 2607615..2608253 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  KJP56_RS14020 (NRS6131_13970) glyS 2608386..2610425 (-) 2040 WP_213419115.1 glycine--tRNA ligase subunit beta -
  KJP56_RS14025 (NRS6131_13975) glyQ 2610418..2611305 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  KJP56_RS14030 (NRS6131_13980) recO 2611602..2612369 (-) 768 WP_049141200.1 DNA repair protein RecO Machinery gene
  KJP56_RS14035 (NRS6131_13985) yqzL 2612406..2612549 (-) 144 WP_003230053.1 YqzL family protein -
  KJP56_RS14040 (NRS6131_13990) era 2612697..2613602 (-) 906 WP_213419116.1 GTPase Era -
  KJP56_RS14045 (NRS6131_13995) cdd 2613583..2613993 (-) 411 WP_003230049.1 cytidine deaminase -
  KJP56_RS14050 (NRS6131_14000) unpK 2614112..2614483 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  KJP56_RS14055 (NRS6131_14005) ybeY 2614464..2614937 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  KJP56_RS14060 (NRS6131_14010) pgpH 2614938..2617073 (-) 2136 WP_213419117.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29326.05 Da        Isoelectric Point: 8.3080

>NTDB_id=1158078 KJP56_RS14030 WP_049141200.1 2611602..2612369(-) (recO) [Bacillus subtilis isolate NRS6131]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGAFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1158078 KJP56_RS14030 WP_049141200.1 2611602..2612369(-) (recO) [Bacillus subtilis isolate NRS6131]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTGCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTTCATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment