Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KJP56_RS12520 Genome accession   NZ_OX419652
Coordinates   2345801..2346421 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6131     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2340801..2351421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP56_RS12480 (NRS6131_12435) ypqE 2341932..2342438 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  KJP56_RS12485 (NRS6131_12440) ypqA 2342576..2342995 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  KJP56_RS12490 (NRS6131_12445) yppG 2343016..2343393 (-) 378 WP_004398696.1 YppG family protein -
  KJP56_RS12495 (NRS6131_12450) yppF 2343581..2343769 (+) 189 WP_003230690.1 YppF family protein -
  KJP56_RS12500 (NRS6131_12455) yppE 2343808..2344179 (-) 372 WP_021481525.1 YppE family protein -
  KJP56_RS12505 (NRS6131_12460) yppD 2344225..2344470 (-) 246 WP_021481526.1 DUF5446 family protein -
  KJP56_RS12510 (NRS6131_12465) sspM 2344669..2344773 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  KJP56_RS12515 (NRS6131_12470) yppC 2344798..2345760 (-) 963 WP_063335220.1 DUF2515 domain-containing protein -
  KJP56_RS12520 (NRS6131_12475) recU 2345801..2346421 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  KJP56_RS12525 (NRS6131_12480) ponA 2346443..2349202 (+) 2760 WP_213419082.1 PBP1A family penicillin-binding protein -
  KJP56_RS12530 (NRS6131_12485) ypoC 2349277..2349771 (-) 495 WP_041849962.1 YpoC family protein -
  KJP56_RS12535 (NRS6131_12490) nth 2349768..2350427 (-) 660 WP_009967580.1 endonuclease III -
  KJP56_RS12540 (NRS6131_12495) dnaD 2350446..2351144 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1158066 KJP56_RS12520 WP_004399067.1 2345801..2346421(+) (recU) [Bacillus subtilis isolate NRS6131]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1158066 KJP56_RS12520 WP_004399067.1 2345801..2346421(+) (recU) [Bacillus subtilis isolate NRS6131]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGCAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment