Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   KJP56_RS06055 Genome accession   NZ_OX419652
Coordinates   1171344..1171922 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6131     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1166344..1176922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP56_RS06035 (NRS6131_06020) hemAT 1166855..1168153 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  KJP56_RS06040 (NRS6131_06025) yhfW 1168292..1169821 (-) 1530 WP_049140685.1 FAD-dependent oxidoreductase -
  KJP56_RS06045 (NRS6131_06030) yhxC 1169933..1170790 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  KJP56_RS06050 (NRS6131_06035) yhzC 1170818..1171051 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  KJP56_RS06055 (NRS6131_06040) comK 1171344..1171922 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  KJP56_RS06060 (NRS6131_06045) yhxD 1171967..1172866 (-) 900 WP_095252622.1 SDR family oxidoreductase -
  KJP56_RS06065 (NRS6131_06050) yhjA 1173083..1173352 (+) 270 WP_213419322.1 excalibur calcium-binding domain-containing protein -
  KJP56_RS06070 (NRS6131_06055) yhjB 1173396..1174865 (-) 1470 WP_213419323.1 sodium:solute symporter -
  KJP56_RS06075 (NRS6131_06060) yhjC 1174862..1175062 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  KJP56_RS06080 (NRS6131_06065) - 1175261..1175632 (-) 372 WP_014476361.1 hypothetical protein -
  KJP56_RS06085 (NRS6131_06070) yhjE 1175784..1176407 (+) 624 WP_010886465.1 VTT domain-containing protein -
  KJP56_RS06090 (NRS6131_06075) lepB 1176409..1176915 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=1158047 KJP56_RS06055 WP_029317573.1 1171344..1171922(+) (comK) [Bacillus subtilis isolate NRS6131]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1158047 KJP56_RS06055 WP_029317573.1 1171344..1171922(+) (comK) [Bacillus subtilis isolate NRS6131]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment