Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   KJP60_RS02350 Genome accession   NZ_OX419580
Coordinates   420260..420658 (-) Length   132 a.a.
NCBI ID   WP_003246342.1    Uniprot ID   A0AAE2SGH7
Organism   Bacillus subtilis isolate NRS6116     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 415260..425658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP60_RS02320 (NRS6116_02405) yckA 415836..416516 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  KJP60_RS02325 (NRS6116_02410) yckB 416526..417389 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  KJP60_RS02330 - 417551..417748 (+) 198 WP_119122841.1 hypothetical protein -
  KJP60_RS02335 (NRS6116_02425) yckC 417767..418222 (+) 456 WP_003246356.1 RDD family protein -
  KJP60_RS02340 (NRS6116_02430) yckD 418304..418636 (+) 333 WP_003246247.1 YckD family protein -
  KJP60_RS02345 (NRS6116_02435) bglC 418790..420223 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  KJP60_RS02350 (NRS6116_02440) nin/comJ 420260..420658 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  KJP60_RS02355 (NRS6116_02445) nucA/comI 420685..421134 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  KJP60_RS02360 (NRS6116_02450) tlpC 421302..423023 (-) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  KJP60_RS02365 (NRS6116_02455) hxlB 423134..423691 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  KJP60_RS02370 (NRS6116_02460) hxlA 423697..424329 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  KJP60_RS02375 (NRS6116_02465) hxlR 424562..424924 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14996.95 Da        Isoelectric Point: 4.8991

>NTDB_id=1157949 KJP60_RS02350 WP_003246342.1 420260..420658(-) (nin/comJ) [Bacillus subtilis isolate NRS6116]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1157949 KJP60_RS02350 WP_003246342.1 420260..420658(-) (nin/comJ) [Bacillus subtilis isolate NRS6116]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTTCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment