Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KJP43_RS19370 Genome accession   NZ_OX419579
Coordinates   3689273..3689962 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis isolate NRS6103     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3684273..3694962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP43_RS19335 (NRS6103_19155) flgN 3684453..3684935 (-) 483 WP_014481048.1 flagellar protein FlgN -
  KJP43_RS19340 (NRS6103_19160) flgM 3684951..3685217 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  KJP43_RS19345 (NRS6103_19165) yvyF 3685298..3685717 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KJP43_RS19350 (NRS6103_19170) comFC 3685791..3686513 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  KJP43_RS19355 (NRS6103_19175) comFB 3686477..3686773 (-) 297 WP_015483764.1 late competence protein ComFB -
  KJP43_RS19360 (NRS6103_19180) comFA 3686833..3688224 (-) 1392 WP_029725993.1 ATP-dependent helicase ComFA Machinery gene
  KJP43_RS19365 (NRS6103_19185) fakBA 3688330..3689175 (-) 846 WP_003227986.1 DegV family protein -
  KJP43_RS19370 (NRS6103_19190) degU 3689273..3689962 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJP43_RS19375 (NRS6103_19195) degS 3690045..3691202 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KJP43_RS19380 (NRS6103_19200) yvyE 3691419..3692072 (+) 654 WP_003227979.1 YigZ family protein -
  KJP43_RS19385 (NRS6103_19205) tagV 3692072..3693247 (+) 1176 WP_072173456.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  KJP43_RS19390 (NRS6103_19210) tagO 3693320..3694396 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1157933 KJP43_RS19370 WP_003219701.1 3689273..3689962(-) (degU) [Bacillus subtilis isolate NRS6103]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1157933 KJP43_RS19370 WP_003219701.1 3689273..3689962(-) (degU) [Bacillus subtilis isolate NRS6103]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCAATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment