Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KJP43_RS12090 Genome accession   NZ_OX419579
Coordinates   2333612..2334232 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6103     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2328612..2339232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP43_RS12050 (NRS6103_11945) ypqE 2329740..2330246 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  KJP43_RS12055 (NRS6103_11950) ypqA 2330384..2330803 (+) 420 WP_029726787.1 Hsp20/alpha crystallin family protein -
  KJP43_RS12060 (NRS6103_11955) yppG 2330824..2331201 (-) 378 WP_015251832.1 YppG family protein -
  KJP43_RS12065 (NRS6103_11960) yppF 2331389..2331577 (+) 189 WP_003230690.1 YppF family protein -
  KJP43_RS12070 (NRS6103_11965) yppE 2331619..2331990 (-) 372 WP_029726786.1 YppE family protein -
  KJP43_RS12075 (NRS6103_11970) yppD 2332036..2332281 (-) 246 WP_015251831.1 YppD family protein -
  KJP43_RS12080 (NRS6103_11975) sspM 2332480..2332584 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  KJP43_RS12085 (NRS6103_11980) yppC 2332609..2333571 (-) 963 WP_029726785.1 DUF2515 domain-containing protein -
  KJP43_RS12090 (NRS6103_11985) recU 2333612..2334232 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  KJP43_RS12095 (NRS6103_11990) ponA 2334254..2336998 (+) 2745 WP_029726784.1 PBP1A family penicillin-binding protein -
  KJP43_RS12100 (NRS6103_11995) ypoC 2337074..2337568 (-) 495 WP_029726783.1 YpoC family protein -
  KJP43_RS12105 (NRS6103_12000) nth 2337565..2338224 (-) 660 WP_029726782.1 endonuclease III -
  KJP43_RS12110 (NRS6103_12005) dnaD 2338243..2338941 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1157901 KJP43_RS12090 WP_004399067.1 2333612..2334232(+) (recU) [Bacillus subtilis isolate NRS6103]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1157901 KJP43_RS12090 WP_004399067.1 2333612..2334232(+) (recU) [Bacillus subtilis isolate NRS6103]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment