Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   KJP43_RS05620 Genome accession   NZ_OX419579
Coordinates   1085555..1086133 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6103     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1080555..1091133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP43_RS05600 (NRS6103_05525) hemAT 1081066..1082364 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  KJP43_RS05605 (NRS6103_05530) yhfW 1082503..1084032 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  KJP43_RS05610 (NRS6103_05535) yhxC 1084144..1085001 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  KJP43_RS05615 (NRS6103_05540) yhzC 1085029..1085262 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  KJP43_RS05620 (NRS6103_05545) comK 1085555..1086133 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  KJP43_RS05625 (NRS6103_05550) yhxD 1086180..1087079 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  KJP43_RS05630 (NRS6103_05555) yhjA 1087296..1087565 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  KJP43_RS05635 (NRS6103_05560) yhjB 1087609..1089078 (-) 1470 WP_029726292.1 sodium:solute symporter -
  KJP43_RS05640 (NRS6103_05565) yhjC 1089075..1089275 (-) 201 WP_153940186.1 DUF3311 domain-containing protein -
  KJP43_RS05645 (NRS6103_05570) - 1089483..1089845 (-) 363 WP_003233132.1 hypothetical protein -
  KJP43_RS05650 (NRS6103_05575) yhjE 1089997..1090620 (+) 624 WP_010886465.1 VTT domain-containing protein -
  KJP43_RS05655 (NRS6103_05580) lepB 1090622..1091128 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=1157882 KJP43_RS05620 WP_029317573.1 1085555..1086133(+) (comK) [Bacillus subtilis isolate NRS6103]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1157882 KJP43_RS05620 WP_029317573.1 1085555..1086133(+) (comK) [Bacillus subtilis isolate NRS6103]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment