Detailed information NTG1157860

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: KJP45_RS18785
• Genome accession: NZ_OX419578
• Coordinates: 3649891..3651036 (+)
• Length: 381 a.a.
• NCBI ID: WP_213414789.1
• Uniprot ID: -
• Organism: Bacillus subtilis isolate NRS6128
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3644891..3656036

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KJP45_RS18765 (NRS6128_18545)	albF	3644907..3646187 (+)	1281	WP_003227558.1	pitrilysin family protein	-
KJP45_RS18770 (NRS6128_18550)	albG	3646184..3646885 (+)	702	WP_213414792.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
KJP45_RS18775 (NRS6128_18555)	ywhL	3646891..3648267 (-)	1377	WP_213414791.1	YncE family protein	-
KJP45_RS18780 (NRS6128_18560)	ywhK	3648306..3649661 (-)	1356	WP_213414790.1	YncE family protein	-
KJP45_RS20640	-	3649658..3649888 (-)	231	WP_033883387.1	hypothetical protein	-
KJP45_RS18785 (NRS6128_18565)	rapF	3649891..3651036 (+)	1146	WP_213414789.1	tetratricopeptide repeat protein	Regulator
KJP45_RS18790 (NRS6128_18570)	-	3651020..3651139 (+)	120	WP_014665774.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
KJP45_RS18795	-	3651254..3651698 (+)	445	Protein_3642	YbaK/EbsC family protein	-
KJP45_RS18800 (NRS6128_18575)	speB	3651735..3652607 (-)	873	WP_003227545.1	agmatinase	-
KJP45_RS18805 (NRS6128_18580)	speE	3652668..3653498 (-)	831	WP_003227543.1	spermidine synthase	-
KJP45_RS18810 (NRS6128_18585)	pbpG	3653701..3655776 (+)	2076	WP_017696252.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45593.28 Da
• Isoelectric Point: 5.1616

>NTDB_id=1157860 KJP45_RS18785 WP_213414789.1 3649891..3651036(+) (rapF) [Bacillus subtilis isolate NRS6128]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYVLAIQFFKKAESKLVFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAKTEQKPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIQVFEGSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGKEYSAAAGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=1157860 KJP45_RS18785 WP_213414789.1 3649891..3651036(+) (rapF) [Bacillus subtilis isolate NRS6128]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTTAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGAATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCGCCGTGAATATGTATTAGCCATTCAATTCTTTAAAAAAGCTGAGAGCAAGCTGGTTTTTG
TGAAAGATAAAATCGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTCGAAATATACAGTGAACAGACTACATATGATATCAGAATGATTCAATGCCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATACGAAAAAGCAATTGCCCATTTTCAAAAAGCCTTTACACTTGCAAAAA
CAGAGCAGAAGCCCCAATTAATGGGAAGAACACTTTATAACATAGCACTCTGCAAGCAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCAAGTATTTGAAGGATCTAAAATGCTCCCTTCACTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCCTGTGAATATCATAAAAAAGGAAAAGAGTATTCTGCAG
CTGCGGGAGATACCGTGTATCTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGGATA
GAAAAATGTTTTGTTTTTCTTGAAAGTAAAATGATGTATGCAGATATTGAGGACTTCGCACTTGATGTTGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

• Tetratricopeptide repeat (TPR_8) (263-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.79	100	0.798
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572