Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   KJP45_RS13705 Genome accession   NZ_OX419578
Coordinates   2648228..2648974 (-) Length   248 a.a.
NCBI ID   WP_213414577.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6128     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2643228..2653974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP45_RS13680 (NRS6128_13540) mreC 2643634..2644506 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  KJP45_RS13685 (NRS6128_13545) mreB 2644537..2645550 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  KJP45_RS13690 (NRS6128_13550) radC 2645642..2646337 (-) 696 WP_014480455.1 DNA repair protein RadC -
  KJP45_RS13695 (NRS6128_13555) maf 2646374..2646943 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  KJP45_RS13700 (NRS6128_13560) spoIIB 2647096..2648094 (-) 999 WP_213414578.1 SPOR domain-containing protein -
  KJP45_RS13705 (NRS6128_13565) comC 2648228..2648974 (-) 747 WP_213414577.1 A24 family peptidase Machinery gene
  KJP45_RS13710 (NRS6128_13570) folC 2649113..2650405 (-) 1293 WP_163189548.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  KJP45_RS13715 (NRS6128_13575) valS 2650465..2653107 (-) 2643 WP_004398606.1 valine--tRNA ligase -
  KJP45_RS13720 (NRS6128_13580) - 2653553..2653744 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26441.02 Da        Isoelectric Point: 9.7944

>NTDB_id=1157843 KJP45_RS13705 WP_213414577.1 2648228..2648974(-) (comC) [Bacillus subtilis isolate NRS6128]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAMAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1157843 KJP45_RS13705 WP_213414577.1 2648228..2648974(-) (comC) [Bacillus subtilis isolate NRS6128]
ATGCTATCCATTCTTTTTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATGGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment