Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KJP45_RS12545 Genome accession   NZ_OX419578
Coordinates   2443524..2444291 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis isolate NRS6128     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2438524..2449291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP45_RS12525 (NRS6128_12430) ppsR 2438699..2439511 (-) 813 WP_032722128.1 pyruvate, water dikinase regulatory protein -
  KJP45_RS12530 (NRS6128_12435) ccpN 2439537..2440175 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  KJP45_RS12535 (NRS6128_12440) glyS 2440308..2442347 (-) 2040 WP_213414612.1 glycine--tRNA ligase subunit beta -
  KJP45_RS12540 (NRS6128_12445) glyQ 2442340..2443227 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  KJP45_RS12545 (NRS6128_12450) recO 2443524..2444291 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  KJP45_RS12550 (NRS6128_12455) yqzL 2444328..2444471 (-) 144 WP_003230053.1 YqzL family protein -
  KJP45_RS12555 (NRS6128_12460) era 2444619..2445524 (-) 906 WP_003230051.1 GTPase Era -
  KJP45_RS12560 (NRS6128_12465) cdd 2445505..2445915 (-) 411 WP_003230049.1 cytidine deaminase -
  KJP45_RS12565 (NRS6128_12470) unpK 2446034..2446405 (-) 372 WP_080529555.1 diacylglycerol kinase family protein -
  KJP45_RS12570 (NRS6128_12475) ybeY 2446386..2446859 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  KJP45_RS12575 (NRS6128_12480) pgpH 2446860..2448995 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=1157835 KJP45_RS12545 WP_014477369.1 2443524..2444291(-) (recO) [Bacillus subtilis isolate NRS6128]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1157835 KJP45_RS12545 WP_014477369.1 2443524..2444291(-) (recO) [Bacillus subtilis isolate NRS6128]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996

Multiple sequence alignment