Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   KJP45_RS12015 Genome accession   NZ_OX419578
Coordinates   2353627..2354430 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6128     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2348627..2359430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP45_RS11990 (NRS6128_11895) glpQ 2349764..2350495 (-) 732 WP_213414621.1 glycerophosphodiester phosphodiesterase -
  KJP45_RS11995 (NRS6128_11900) yqiI 2350574..2351194 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  KJP45_RS12000 (NRS6128_11905) - 2351214..2351510 (-) 297 WP_014480225.1 hypothetical protein -
  KJP45_RS12005 - 2351818..2351970 (+) 153 WP_014480226.1 hypothetical protein -
  KJP45_RS12010 (NRS6128_11910) yqiG 2352043..2353161 (+) 1119 WP_128441712.1 NADH-dependent flavin oxidoreductase -
  KJP45_RS12015 (NRS6128_11920) spo0A 2353627..2354430 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  KJP45_RS12020 (NRS6128_11925) spoIVB 2354706..2355986 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  KJP45_RS12025 (NRS6128_11930) recN 2356161..2357891 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  KJP45_RS12030 (NRS6128_11935) argR 2357928..2358377 (-) 450 WP_003230265.1 arginine repressor ArgR -
  KJP45_RS12035 (NRS6128_11940) yqxC 2358475..2359320 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1157824 KJP45_RS12015 WP_003226427.1 2353627..2354430(-) (spo0A) [Bacillus subtilis isolate NRS6128]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1157824 KJP45_RS12015 WP_003226427.1 2353627..2354430(-) (spo0A) [Bacillus subtilis isolate NRS6128]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment