Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KJP45_RS11025 Genome accession   NZ_OX419578
Coordinates   2176196..2176816 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6128     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2171196..2181816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP45_RS10985 (NRS6128_10900) ypqE 2172327..2172833 (-) 507 WP_069703931.1 PTS glucose transporter subunit IIA -
  KJP45_RS10990 (NRS6128_10905) ypqA 2172971..2173390 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  KJP45_RS10995 (NRS6128_10910) yppG 2173411..2173788 (-) 378 WP_014477159.1 YppG family protein -
  KJP45_RS11000 (NRS6128_10915) yppF 2173976..2174164 (+) 189 WP_003230690.1 YppF family protein -
  KJP45_RS11005 (NRS6128_10920) yppE 2174203..2174574 (-) 372 WP_015714151.1 YppE family protein -
  KJP45_RS11010 (NRS6128_10925) yppD 2174620..2174865 (-) 246 WP_015251831.1 YppD family protein -
  KJP45_RS11015 (NRS6128_10930) sspM 2175064..2175168 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  KJP45_RS11020 (NRS6128_10935) yppC 2175193..2176155 (-) 963 WP_213414655.1 DUF2515 domain-containing protein -
  KJP45_RS11025 (NRS6128_10940) recU 2176196..2176816 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  KJP45_RS11030 (NRS6128_10945) ponA 2176838..2179588 (+) 2751 WP_213414654.1 PBP1A family penicillin-binding protein -
  KJP45_RS11035 (NRS6128_10950) ypoC 2179664..2180158 (-) 495 WP_029726783.1 YpoC family protein -
  KJP45_RS11040 (NRS6128_10955) nth 2180155..2180814 (-) 660 WP_009967580.1 endonuclease III -
  KJP45_RS11045 (NRS6128_10960) dnaD 2180833..2181531 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1157823 KJP45_RS11025 WP_004399067.1 2176196..2176816(+) (recU) [Bacillus subtilis isolate NRS6128]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1157823 KJP45_RS11025 WP_004399067.1 2176196..2176816(+) (recU) [Bacillus subtilis isolate NRS6128]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment