Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   KJP47_RS14885 Genome accession   NZ_OX419577
Coordinates   2746659..2747405 (-) Length   248 a.a.
NCBI ID   WP_026113741.1    Uniprot ID   A0AAQ3EXH2
Organism   Bacillus subtilis isolate NRS6120     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2741659..2752405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP47_RS14860 (NRS6120_15370) mreC 2742065..2742937 (-) 873 WP_213382144.1 rod shape-determining protein MreC -
  KJP47_RS14865 (NRS6120_15375) mreB 2742968..2743981 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  KJP47_RS14870 (NRS6120_15380) radC 2744073..2744768 (-) 696 WP_041351757.1 DNA repair protein RadC -
  KJP47_RS14875 (NRS6120_15385) maf 2744805..2745374 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  KJP47_RS14880 (NRS6120_15390) spoIIB 2745527..2746525 (-) 999 WP_017697540.1 stage II sporulation protein SpoIIB -
  KJP47_RS14885 (NRS6120_15395) comC 2746659..2747405 (-) 747 WP_026113741.1 A24 family peptidase Machinery gene
  KJP47_RS14890 (NRS6120_15400) folC 2747545..2748837 (-) 1293 WP_121591026.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  KJP47_RS14895 (NRS6120_15405) valS 2748897..2751539 (-) 2643 WP_213382208.1 valine--tRNA ligase -
  KJP47_RS14900 (NRS6120_15410) - 2751987..2752178 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=1157763 KJP47_RS14885 WP_026113741.1 2746659..2747405(-) (comC) [Bacillus subtilis isolate NRS6120]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDLHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1157763 KJP47_RS14885 WP_026113741.1 2746659..2747405(-) (comC) [Bacillus subtilis isolate NRS6120]
ATGCTATCCATTCTTTTTATCTTTGGGCTTATTCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCTCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGTTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGGGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTAATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment