Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KJP47_RS13520 Genome accession   NZ_OX419577
Coordinates   2508314..2509081 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis isolate NRS6120     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2503314..2514081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP47_RS13500 (NRS6120_14030) ppsR 2503489..2504301 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  KJP47_RS13505 (NRS6120_14035) ccpN 2504327..2504965 (-) 639 WP_213381564.1 helix-turn-helix transcriptional regulator -
  KJP47_RS13510 (NRS6120_14040) glyS 2505098..2507137 (-) 2040 WP_213381561.1 glycine--tRNA ligase subunit beta -
  KJP47_RS13515 (NRS6120_14045) glyQ 2507130..2508017 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  KJP47_RS13520 (NRS6120_14050) recO 2508314..2509081 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  KJP47_RS13525 (NRS6120_14055) yqzL 2509118..2509261 (-) 144 WP_003230053.1 YqzL family protein -
  KJP47_RS13530 (NRS6120_14060) era 2509409..2510314 (-) 906 WP_213381558.1 GTPase Era -
  KJP47_RS13535 (NRS6120_14065) cdd 2510295..2510705 (-) 411 WP_003230049.1 cytidine deaminase -
  KJP47_RS13540 (NRS6120_14070) unpK 2510824..2511195 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  KJP47_RS13545 (NRS6120_14075) ybeY 2511176..2511649 (-) 474 WP_014480295.1 rRNA maturation RNase YbeY -
  KJP47_RS13550 (NRS6120_14080) pgpH 2511650..2513785 (-) 2136 WP_080031083.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=1157756 KJP47_RS13520 WP_014477369.1 2508314..2509081(-) (recO) [Bacillus subtilis isolate NRS6120]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1157756 KJP47_RS13520 WP_014477369.1 2508314..2509081(-) (recO) [Bacillus subtilis isolate NRS6120]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAGAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGCTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996

Multiple sequence alignment