Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   KJP47_RS12965 Genome accession   NZ_OX419577
Coordinates   2411749..2412552 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6120     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2406749..2417552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP47_RS12940 (NRS6120_13475) glpQ 2407880..2408611 (-) 732 WP_043857797.1 glycerophosphodiester phosphodiesterase -
  KJP47_RS12945 (NRS6120_13480) yqiI 2408690..2409317 (-) 628 Protein_2502 N-acetylmuramoyl-L-alanine amidase -
  KJP47_RS12950 (NRS6120_13485) - 2409337..2409633 (-) 297 WP_144453281.1 hypothetical protein -
  KJP47_RS12955 (NRS6120_13490) - 2409941..2410093 (+) 153 WP_129137781.1 hypothetical protein -
  KJP47_RS12960 (NRS6120_13495) yqiG 2410166..2411284 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  KJP47_RS12965 (NRS6120_13505) spo0A 2411749..2412552 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  KJP47_RS12970 (NRS6120_13510) spoIVB 2412828..2414108 (-) 1281 WP_017696436.1 SpoIVB peptidase -
  KJP47_RS12975 (NRS6120_13515) recN 2414283..2416013 (-) 1731 WP_213381684.1 DNA repair protein RecN Machinery gene
  KJP47_RS12980 (NRS6120_13520) argR 2416050..2416499 (-) 450 WP_017696434.1 arginine repressor ArgR -
  KJP47_RS12985 (NRS6120_13525) yqxC 2416597..2417442 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1157745 KJP47_RS12965 WP_003226427.1 2411749..2412552(-) (spo0A) [Bacillus subtilis isolate NRS6120]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1157745 KJP47_RS12965 WP_003226427.1 2411749..2412552(-) (spo0A) [Bacillus subtilis isolate NRS6120]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATAGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment