Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KJP47_RS11950 Genome accession   NZ_OX419577
Coordinates   2228037..2228657 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6120     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2223037..2233657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP47_RS11910 (NRS6120_12405) ypqE 2224196..2224702 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  KJP47_RS11915 (NRS6120_12410) ypqA 2224840..2225259 (+) 420 WP_015714150.1 Hsp20/alpha crystallin family protein -
  KJP47_RS11920 (NRS6120_12415) yppG 2225280..2225657 (-) 378 WP_210216281.1 YppG family protein -
  KJP47_RS11925 (NRS6120_12420) yppF 2225844..2226032 (+) 189 WP_003230690.1 YppF family protein -
  KJP47_RS11930 (NRS6120_12425) yppE 2226071..2226442 (-) 372 WP_017696991.1 YppE family protein -
  KJP47_RS11935 (NRS6120_12430) yppD 2226488..2226733 (-) 246 WP_015251831.1 YppD family protein -
  KJP47_RS11940 (NRS6120_12435) sspM 2226932..2227036 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  KJP47_RS11945 (NRS6120_12440) yppC 2227069..2227996 (-) 928 Protein_2302 DUF2515 domain-containing protein -
  KJP47_RS11950 (NRS6120_12445) recU 2228037..2228657 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  KJP47_RS11955 (NRS6120_12450) ponA 2228679..2231426 (+) 2748 WP_213382798.1 PBP1A family penicillin-binding protein -
  KJP47_RS11960 (NRS6120_12455) ypoC 2231503..2231997 (-) 495 WP_041351582.1 YpoC family protein -
  KJP47_RS11965 (NRS6120_12460) nth 2231994..2232653 (-) 660 WP_213382796.1 endonuclease III -
  KJP47_RS11970 (NRS6120_12465) dnaD 2232672..2233370 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1157744 KJP47_RS11950 WP_004399067.1 2228037..2228657(+) (recU) [Bacillus subtilis isolate NRS6120]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1157744 KJP47_RS11950 WP_004399067.1 2228037..2228657(+) (recU) [Bacillus subtilis isolate NRS6120]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGACGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment