Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KJP47_RS08800 Genome accession   NZ_OX419577
Coordinates   1692718..1693611 (+) Length   297 a.a.
NCBI ID   WP_213382450.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6120     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1687718..1698611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP47_RS08780 (NRS6120_09245) - 1688391..1690118 (+) 1728 WP_213382444.1 hypothetical protein -
  KJP47_RS08785 (NRS6120_09250) ylqH 1690115..1690396 (+) 282 WP_213382447.1 FlhB-like flagellar biosynthesis protein -
  KJP47_RS08790 (NRS6120_09255) sucC 1690569..1691726 (+) 1158 WP_014663957.1 ADP-forming succinate--CoA ligase subunit beta -
  KJP47_RS08795 (NRS6120_09260) sucD 1691755..1692657 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  KJP47_RS08800 (NRS6120_09265) dprA 1692718..1693611 (+) 894 WP_213382450.1 DNA-processing protein DprA Machinery gene
  KJP47_RS08805 (NRS6120_09270) topA 1693799..1695874 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  KJP47_RS08810 (NRS6120_09275) trmFO 1695950..1697257 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KJP47_RS08815 (NRS6120_09280) xerC 1697325..1698239 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32879.21 Da        Isoelectric Point: 9.7057

>NTDB_id=1157740 KJP47_RS08800 WP_213382450.1 1692718..1693611(+) (dprA) [Bacillus subtilis isolate NRS6120]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQCVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITV
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=1157740 KJP47_RS08800 WP_213382450.1 1692718..1693611(+) (dprA) [Bacillus subtilis isolate NRS6120]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCTGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGTGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACGAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGTC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.316

100

0.983
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377

Multiple sequence alignment