Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   KJP47_RS05805 Genome accession   NZ_OX419577
Coordinates   1125900..1126478 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis isolate NRS6120     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1120900..1131478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP47_RS05785 (NRS6120_06110) hemAT 1121418..1122716 (-) 1299 WP_041338163.1 heme-based aerotactic transducer HemAT -
  KJP47_RS05790 (NRS6120_06120) yhfW 1122855..1124385 (-) 1531 Protein_1075 FAD-dependent oxidoreductase -
  KJP47_RS05795 (NRS6120_06125) yhxC 1124489..1125346 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  KJP47_RS05800 (NRS6120_06130) yhzC 1125374..1125607 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  KJP47_RS05805 (NRS6120_06135) comK 1125900..1126478 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  KJP47_RS05810 (NRS6120_06140) yhxD 1126523..1127422 (-) 900 WP_213383795.1 SDR family oxidoreductase -
  KJP47_RS05815 (NRS6120_06145) yhjA 1127639..1127908 (+) 270 WP_021479615.1 excalibur calcium-binding domain-containing protein -
  KJP47_RS05820 (NRS6120_06150) yhjB 1127952..1129421 (-) 1470 WP_213383794.1 sodium:solute symporter -
  KJP47_RS05825 (NRS6120_06155) yhjC 1129418..1129618 (-) 201 WP_043857242.1 DUF3311 domain-containing protein -
  KJP47_RS05830 (NRS6120_06160) - 1129804..1130166 (-) 363 WP_121591604.1 hypothetical protein -
  KJP47_RS05835 (NRS6120_06165) yhjE 1130318..1130941 (+) 624 WP_213383793.1 TVP38/TMEM64 family protein -
  KJP47_RS05840 (NRS6120_06170) lepB 1130943..1131449 (+) 507 WP_213383792.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1157726 KJP47_RS05805 WP_003245329.1 1125900..1126478(+) (comK) [Bacillus subtilis isolate NRS6120]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1157726 KJP47_RS05805 WP_003245329.1 1125900..1126478(+) (comK) [Bacillus subtilis isolate NRS6120]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATATGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment