Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KJP51_RS16105 Genome accession   NZ_OX419576
Coordinates   3104970..3105614 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6105     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3099970..3110614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP51_RS16070 (NRS6105_15940) mrpB 3101162..3101593 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  KJP51_RS16075 (NRS6105_15945) mrpC 3101593..3101934 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  KJP51_RS16080 (NRS6105_15950) mrpD 3101927..3103408 (+) 1482 WP_213379912.1 Na+/H+ antiporter subunit D -
  KJP51_RS16085 (NRS6105_15955) mrpE 3103414..3103890 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  KJP51_RS16090 (NRS6105_15960) mrpF 3103890..3104174 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  KJP51_RS16095 (NRS6105_15965) mnhG 3104158..3104532 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  KJP51_RS16100 (NRS6105_15970) yuxO 3104571..3104951 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  KJP51_RS16105 (NRS6105_15975) comA 3104970..3105614 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  KJP51_RS16110 (NRS6105_15980) comP 3105695..3107992 (-) 2298 WP_033884760.1 histidine kinase Regulator
  KJP51_RS16115 (NRS6105_15985) comX 3108000..3108161 (-) 162 WP_003228803.1 competence pheromone ComX -
  KJP51_RS16120 (NRS6105_15990) - 3108176..3109036 (-) 861 WP_192857944.1 polyprenyl synthetase family protein -
  KJP51_RS16125 (NRS6105_15995) degQ 3109221..3109361 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  KJP51_RS16130 - 3109583..3109708 (+) 126 WP_003228793.1 hypothetical protein -
  KJP51_RS16135 (NRS6105_16000) - 3109822..3110190 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1157694 KJP51_RS16105 WP_003220716.1 3104970..3105614(-) (comA) [Bacillus subtilis isolate NRS6105]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1157694 KJP51_RS16105 WP_003220716.1 3104970..3105614(-) (comA) [Bacillus subtilis isolate NRS6105]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment