Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   KJP51_RS12040 Genome accession   NZ_OX419576
Coordinates   2365083..2365886 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6105     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2360083..2370886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP51_RS12015 (NRS6105_11920) glpQ 2361229..2361960 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  KJP51_RS12020 (NRS6105_11925) yqiI 2362039..2362659 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  KJP51_RS12025 (NRS6105_11930) yqiH 2362674..2362967 (-) 294 WP_003230284.1 lipoprotein -
  KJP51_RS12030 - 2363275..2363427 (+) 153 WP_014480226.1 hypothetical protein -
  KJP51_RS12035 (NRS6105_11935) yqiG 2363500..2364618 (+) 1119 WP_042976476.1 NADH-dependent flavin oxidoreductase -
  KJP51_RS12040 (NRS6105_11945) spo0A 2365083..2365886 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  KJP51_RS12045 (NRS6105_11950) spoIVB 2366162..2367442 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  KJP51_RS12050 (NRS6105_11955) recN 2367617..2369347 (-) 1731 WP_213379478.1 DNA repair protein RecN Machinery gene
  KJP51_RS12055 (NRS6105_11960) argR 2369384..2369833 (-) 450 WP_003230265.1 arginine repressor ArgR -
  KJP51_RS12060 (NRS6105_11965) yqxC 2369931..2370776 (-) 846 WP_213379480.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1157670 KJP51_RS12040 WP_003226427.1 2365083..2365886(-) (spo0A) [Bacillus subtilis isolate NRS6105]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1157670 KJP51_RS12040 WP_003226427.1 2365083..2365886(-) (spo0A) [Bacillus subtilis isolate NRS6105]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment