Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KJP51_RS11050 Genome accession   NZ_OX419576
Coordinates   2187851..2188471 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6105     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2182851..2193471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP51_RS11010 (NRS6105_10925) ypqE 2183982..2184488 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  KJP51_RS11015 (NRS6105_10930) ypqA 2184626..2185045 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  KJP51_RS11020 (NRS6105_10935) yppG 2185066..2185443 (-) 378 WP_004398696.1 YppG family protein -
  KJP51_RS11025 (NRS6105_10940) yppF 2185631..2185819 (+) 189 WP_003230690.1 YppF family protein -
  KJP51_RS11030 (NRS6105_10945) yppE 2185858..2186229 (-) 372 WP_003246080.1 YppE family protein -
  KJP51_RS11035 (NRS6105_10950) yppD 2186275..2186520 (-) 246 WP_004398488.1 YppD family protein -
  KJP51_RS11040 (NRS6105_10955) sspM 2186719..2186823 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  KJP51_RS11045 (NRS6105_10960) yppC 2186848..2187810 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  KJP51_RS11050 (NRS6105_10965) recU 2187851..2188471 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  KJP51_RS11055 (NRS6105_10970) ponA 2188493..2191237 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  KJP51_RS11060 (NRS6105_10975) ypoC 2191313..2191807 (-) 495 WP_009967579.1 YpoC family protein -
  KJP51_RS11065 (NRS6105_10980) nth 2191804..2192463 (-) 660 WP_009967580.1 endonuclease III -
  KJP51_RS11070 (NRS6105_10985) dnaD 2192482..2193180 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1157669 KJP51_RS11050 WP_004399067.1 2187851..2188471(+) (recU) [Bacillus subtilis isolate NRS6105]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1157669 KJP51_RS11050 WP_004399067.1 2187851..2188471(+) (recU) [Bacillus subtilis isolate NRS6105]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment