Detailed information    

insolico Bioinformatically predicted

Overview


Name   abrB   Type   Regulator
Locus tag   KJP51_RS07820 Genome accession   NZ_OX419576
Coordinates   1494261..1494539 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis isolate NRS6105     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context


Location: 1489261..1499539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP51_RS07800 (NRS6105_07730) - 1490448..1491359 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  KJP51_RS07805 (NRS6105_07735) ampS 1491393..1492625 (-) 1233 WP_003232341.1 aminopeptidase -
  KJP51_RS07810 (NRS6105_07740) ykpC 1492735..1492869 (-) 135 WP_003238865.1 protein YkpC -
  KJP51_RS07815 (NRS6105_07745) mreBH 1492970..1493977 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  KJP51_RS07820 (NRS6105_07750) abrB 1494261..1494539 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  KJP51_RS07825 (NRS6105_07755) kinC 1494729..1496015 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  KJP51_RS07830 (NRS6105_07760) ykqA 1496031..1496864 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  KJP51_RS07835 (NRS6105_07765) ktrC 1496927..1497592 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  KJP51_RS07840 (NRS6105_07770) ade 1497747..1499480 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence


Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=1157664 KJP51_RS07820 WP_003244728.1 1494261..1494539(+) (abrB) [Bacillus subtilis isolate NRS6105]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1157664 KJP51_RS07820 WP_003244728.1 1494261..1494539(+) (abrB) [Bacillus subtilis isolate NRS6105]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576


Multiple sequence alignment