Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   KJP51_RS05640 Genome accession   NZ_OX419576
Coordinates   1093485..1094063 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis isolate NRS6105     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1088485..1099063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP51_RS05620 (NRS6105_05565) hemAT 1088996..1090294 (-) 1299 WP_015252424.1 heme-based aerotactic transducer HemAT -
  KJP51_RS05625 (NRS6105_05570) yhfW 1090433..1091962 (-) 1530 WP_129137558.1 FAD-dependent oxidoreductase -
  KJP51_RS05630 (NRS6105_05575) yhxC 1092074..1092931 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  KJP51_RS05635 (NRS6105_05580) yhzC 1092959..1093192 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  KJP51_RS05640 (NRS6105_05585) comK 1093485..1094063 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  KJP51_RS05645 (NRS6105_05590) yhxD 1094110..1095009 (-) 900 WP_213379289.1 SDR family oxidoreductase -
  KJP51_RS05650 (NRS6105_05595) yhjA 1095223..1095492 (+) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  KJP51_RS05655 (NRS6105_05600) yhjB 1095536..1097005 (-) 1470 WP_015252422.1 sodium:solute symporter -
  KJP51_RS05660 (NRS6105_05605) yhjC 1097002..1097202 (-) 201 WP_015252421.1 DUF3311 domain-containing protein -
  KJP51_RS05665 (NRS6105_05610) - 1097401..1097772 (-) 372 WP_014476361.1 hypothetical protein -
  KJP51_RS05670 (NRS6105_05615) yhjE 1097924..1098547 (+) 624 WP_010886465.1 VTT domain-containing protein -
  KJP51_RS05675 (NRS6105_05620) lepB 1098549..1099055 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1157650 KJP51_RS05640 WP_003245329.1 1093485..1094063(+) (comK) [Bacillus subtilis isolate NRS6105]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1157650 KJP51_RS05640 WP_003245329.1 1093485..1094063(+) (comK) [Bacillus subtilis isolate NRS6105]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment