Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KJP57_RS19835 Genome accession   NZ_OX419573
Coordinates   3751983..3752672 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis isolate NRS6085     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3746983..3757672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP57_RS19800 (NRS6085_19745) flgN 3747163..3747645 (-) 483 WP_014481048.1 flagellar protein FlgN -
  KJP57_RS19805 (NRS6085_19750) flgM 3747661..3747927 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  KJP57_RS19810 (NRS6085_19755) yvyF 3748008..3748427 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KJP57_RS19815 (NRS6085_19760) comFC 3748501..3749223 (-) 723 WP_130572909.1 comF operon protein ComFC Machinery gene
  KJP57_RS19820 (NRS6085_19765) comFB 3749187..3749483 (-) 297 WP_015483764.1 late competence protein ComFB -
  KJP57_RS19825 (NRS6085_19770) comFA 3749543..3750934 (-) 1392 WP_086344383.1 ATP-dependent helicase ComFA Machinery gene
  KJP57_RS19830 (NRS6085_19775) fakBA 3751040..3751885 (-) 846 WP_086344384.1 DegV family protein -
  KJP57_RS19835 (NRS6085_19780) degU 3751983..3752672 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJP57_RS19840 (NRS6085_19785) degS 3752755..3753912 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KJP57_RS19845 (NRS6085_19790) yvyE 3754129..3754782 (+) 654 WP_003227979.1 YigZ family protein -
  KJP57_RS19850 (NRS6085_19795) tagV 3754782..3755948 (+) 1167 WP_134154579.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  KJP57_RS19855 (NRS6085_19800) tagO 3756021..3757097 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1157532 KJP57_RS19835 WP_003219701.1 3751983..3752672(-) (degU) [Bacillus subtilis isolate NRS6085]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1157532 KJP57_RS19835 WP_003219701.1 3751983..3752672(-) (degU) [Bacillus subtilis isolate NRS6085]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment