Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KJP57_RS14050 Genome accession   NZ_OX419573
Coordinates   2661380..2662147 (-) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6085     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2656380..2667147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP57_RS14030 (NRS6085_14035) ppsR 2656554..2657366 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  KJP57_RS14035 (NRS6085_14040) ccpN 2657392..2658030 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  KJP57_RS14040 (NRS6085_14045) glyS 2658163..2660202 (-) 2040 WP_064671021.1 glycine--tRNA ligase subunit beta -
  KJP57_RS14045 (NRS6085_14050) glyQ 2660195..2661082 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  KJP57_RS14050 (NRS6085_14055) recO 2661380..2662147 (-) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  KJP57_RS14055 (NRS6085_14060) yqzL 2662184..2662327 (-) 144 WP_003230053.1 YqzL family protein -
  KJP57_RS14060 (NRS6085_14065) era 2662475..2663380 (-) 906 WP_003230051.1 GTPase Era -
  KJP57_RS14065 (NRS6085_14070) cdd 2663361..2663771 (-) 411 WP_032722130.1 cytidine deaminase -
  KJP57_RS14070 (NRS6085_14075) unpK 2663890..2664261 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  KJP57_RS14075 (NRS6085_14080) ybeY 2664242..2664715 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  KJP57_RS14080 (NRS6085_14085) pgpH 2664716..2666851 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=1157510 KJP57_RS14050 WP_015384118.1 2661380..2662147(-) (recO) [Bacillus subtilis isolate NRS6085]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1157510 KJP57_RS14050 WP_015384118.1 2661380..2662147(-) (recO) [Bacillus subtilis isolate NRS6085]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTTTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTCTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAGCATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment