Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KJP57_RS08985 Genome accession   NZ_OX419573
Coordinates   1701180..1702073 (+) Length   297 a.a.
NCBI ID   WP_015715882.1    Uniprot ID   A0A8E0SFH2
Organism   Bacillus subtilis isolate NRS6085     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1696180..1707073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP57_RS08965 (NRS6085_08955) - 1696850..1698580 (+) 1731 WP_128737846.1 hypothetical protein -
  KJP57_RS08970 (NRS6085_08960) ylqH 1698577..1698858 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  KJP57_RS08975 (NRS6085_08965) sucC 1699031..1700188 (+) 1158 WP_128737847.1 ADP-forming succinate--CoA ligase subunit beta -
  KJP57_RS08980 (NRS6085_08970) sucD 1700217..1701119 (+) 903 WP_024572248.1 succinate--CoA ligase subunit alpha -
  KJP57_RS08985 (NRS6085_08975) dprA 1701180..1702073 (+) 894 WP_015715882.1 DNA-processing protein DprA Machinery gene
  KJP57_RS08990 (NRS6085_08980) topA 1702261..1704336 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  KJP57_RS08995 (NRS6085_08985) trmFO 1704412..1705719 (+) 1308 WP_213407727.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KJP57_RS09000 (NRS6085_08990) xerC 1705787..1706701 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32904.21 Da        Isoelectric Point: 9.9142

>NTDB_id=1157494 KJP57_RS08985 WP_015715882.1 1701180..1702073(+) (dprA) [Bacillus subtilis isolate NRS6085]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=1157494 KJP57_RS08985 WP_015715882.1 1701180..1702073(+) (dprA) [Bacillus subtilis isolate NRS6085]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTGAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGATCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.99

100

0.99
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377

Multiple sequence alignment