Detailed information    

insolico Bioinformatically predicted

Overview


Name   abrB   Type   Regulator
Locus tag   KJP57_RS08150 Genome accession   NZ_OX419573
Coordinates   1535788..1536066 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis isolate NRS6085     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context


Location: 1530788..1541066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP57_RS08130 (NRS6085_08115) - 1531976..1532887 (+) 912 WP_021479370.1 ketopantoate reductase family protein -
  KJP57_RS08135 (NRS6085_08120) ampS 1532921..1534153 (-) 1233 WP_003232341.1 aminopeptidase -
  KJP57_RS08140 (NRS6085_08125) ykpC 1534262..1534396 (-) 135 WP_003238865.1 protein YkpC -
  KJP57_RS08145 (NRS6085_08130) mreBH 1534497..1535504 (-) 1008 WP_024572115.1 cell shape-determining protein MreBH -
  KJP57_RS08150 (NRS6085_08135) abrB 1535788..1536066 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  KJP57_RS08155 (NRS6085_08140) kinC 1536256..1537542 (+) 1287 WP_021479369.1 two-component sensor histidine kinase KinC -
  KJP57_RS08160 (NRS6085_08145) ykqA 1537558..1538385 (+) 828 WP_137200749.1 gamma-glutamylcyclotransferase -
  KJP57_RS08165 (NRS6085_08150) ktrC 1538448..1539113 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  KJP57_RS08170 (NRS6085_08155) ade 1539268..1541001 (+) 1734 WP_213407714.1 adenine deaminase -

Sequence


Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=1157493 KJP57_RS08150 WP_003244728.1 1535788..1536066(+) (abrB) [Bacillus subtilis isolate NRS6085]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1157493 KJP57_RS08150 WP_003244728.1 1535788..1536066(+) (abrB) [Bacillus subtilis isolate NRS6085]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576


Multiple sequence alignment