Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   SMUFR_RS01290 Genome accession   NZ_CP007016
Coordinates   247427..248479 (+) Length   350 a.a.
NCBI ID   WP_002262737.1    Uniprot ID   Q8DW22
Organism   Streptococcus mutans UA159-FR     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 242427..253479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUFR_RS01275 (SMUFR_0214) - 243706..245355 (+) 1650 WP_002262740.1 peptide ABC transporter substrate-binding protein -
  SMUFR_RS01280 (SMUFR_0215) - 245461..246375 (+) 915 WP_002262739.1 ABC transporter permease -
  SMUFR_RS01285 (SMUFR_0216) - 246386..247417 (+) 1032 WP_002262738.1 ABC transporter permease -
  SMUFR_RS01290 (SMUFR_0217) oppD 247427..248479 (+) 1053 WP_002262737.1 ABC transporter ATP-binding protein Regulator
  SMUFR_RS01295 (SMUFR_0218) amiF 248472..249398 (+) 927 WP_002262736.1 ABC transporter ATP-binding protein Regulator
  SMUFR_RS01300 (SMUFR_0219) - 250054..250656 (+) 603 WP_002262735.1 nitroreductase family protein -
  SMUFR_RS01305 (SMUFR_0220) - 250873..251829 (-) 957 WP_002262734.1 helix-turn-helix transcriptional regulator -
  SMUFR_RS01310 (SMUFR_0221) ptcA 252068..253087 (+) 1020 WP_002282737.1 putrescine carbamoyltransferase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39171.64 Da        Isoelectric Point: 5.5583

>NTDB_id=115743 SMUFR_RS01290 WP_002262737.1 247427..248479(+) (oppD) [Streptococcus mutans UA159-FR]
MSKEKILQVNNLHVNFHTYAGEVKAIRDVSFYLEKGETLAIVGESGSGKSVTTRTLMGLSAKNAEIFGDIEFKGHNLNDL
KEEDWVHIRGNDISMIFQDPMTSLDPTMRIGLQIAEPIIKHEKVTKKEALKRALDMMEKVGIPNAQEHINDYPHQWSGGM
RQRAVIAIALATNPEILVADEPTTALDVTIQAQILHLMKEIQKNTDSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTNTASGSLHSIPGTPPDLLQPPQGDAFAPRNEFALDIDLKEEPPFFKVSDSHYAATWLL
DDRAPKITPPERILQRWEKWKSLQGEKHND

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=115743 SMUFR_RS01290 WP_002262737.1 247427..248479(+) (oppD) [Streptococcus mutans UA159-FR]
ATGAGTAAGGAAAAAATTTTACAAGTCAATAACCTCCATGTCAATTTTCATACCTATGCAGGTGAAGTAAAAGCTATTCG
CGATGTTAGTTTTTATTTAGAAAAAGGGGAAACGCTGGCTATTGTTGGCGAATCTGGTTCTGGAAAGTCGGTAACCACAC
GAACTTTAATGGGGTTGTCAGCAAAGAATGCTGAGATTTTCGGAGATATTGAGTTTAAGGGACACAATCTAAATGATTTG
AAGGAAGAAGACTGGGTTCATATTCGCGGAAATGATATTTCCATGATTTTCCAAGATCCTATGACAAGTTTGGATCCAAC
CATGCGTATTGGCCTTCAAATTGCTGAACCTATTATCAAGCATGAAAAAGTAACTAAAAAAGAAGCTCTTAAGCGGGCTC
TTGACATGATGGAAAAGGTTGGTATTCCCAATGCGCAAGAACACATCAACGATTATCCTCACCAGTGGTCAGGCGGTATG
CGCCAGCGCGCTGTCATAGCTATTGCTTTGGCAACTAATCCTGAAATCCTTGTTGCAGATGAACCAACGACGGCTCTTGA
TGTTACCATTCAAGCACAAATTCTTCATTTAATGAAAGAAATCCAAAAGAATACTGACTCTTCCATTATCTTTATCACTC
ATGATTTGGGTGTCGTTGCAGGTATGGCAGACCGTGTTGCTGTTATGTATGCAGGCAAGATTGTGGAATATGGTACAGTA
GATGAGGTTTTCTACAACCCACAGCATCCCTACACTTGGGGGCTTCTCAATTCGATGCCTACAACTAATACAGCTTCAGG
CAGTTTGCATTCAATTCCCGGAACACCGCCTGACTTGTTGCAGCCCCCTCAAGGAGATGCTTTTGCTCCAAGAAATGAAT
TCGCTCTTGATATTGATCTTAAGGAGGAGCCGCCATTTTTTAAAGTTAGTGATTCACATTATGCTGCTACTTGGCTGTTA
GATGATCGTGCTCCTAAGATTACTCCGCCGGAAAGAATTTTGCAGCGTTGGGAAAAATGGAAGAGCTTACAGGGAGAAAA
GCATAATGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DW22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

100

100

1
  amiE Streptococcus salivarius strain HSISS4

54.728

99.714

0.546
  amiE Streptococcus thermophilus LMG 18311

54.441

99.714

0.543
  amiE Streptococcus thermophilus LMD-9

54.441

99.714

0.543

Multiple sequence alignment